A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
129.9
nTPM
Monaco:
242.1
nTPM
Schmiedel:
96.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.9
HPA sample
nTPM
Classical monocyte nTPM: 120.4
Samples: 6
Max nTPM: 155.5
Min nTPM: 100.6
P10809_1003
131.0
P10809_1020
110.3
P10809_1039
109.6
P10809_1058
115.7
P10809_1080
100.6
P10809_1107
155.5
Intermediate monocyte nTPM: 109.9
Samples: 6
Max nTPM: 140.0
Min nTPM: 85.9
P10809_1004
105.7
P10809_1023
106.8
P10809_1042
104.5
P10809_1061
116.7
P10809_1081
85.9
P10809_1108
140.0
Non-classical monocyte nTPM: 129.9
Samples: 5
Max nTPM: 240.9
Min nTPM: 74.2
P10809_1005
109.5
P10809_1053
103.6
P10809_1072
240.9
P10809_1082
74.2
P10809_1109
121.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
242.1
Monaco sample
nTPM
Classical monocyte nTPM: 242.1
Samples: 4
Max nTPM: 256.5
Min nTPM: 228.7
RHH5313_R3680
229.8
RHH5221_R3593
256.5
RHH5250_R3622
253.3
RHH5279_R3651
228.7
Intermediate monocyte nTPM: 180.9
Samples: 4
Max nTPM: 210.8
Min nTPM: 149.1
RHH5314_R3681
210.8
RHH5222_R3594
149.1
RHH5251_R3623
153.3
RHH5280_R3652
210.4
Non-classical monocyte nTPM: 166.8
Samples: 4
Max nTPM: 202.0
Min nTPM: 139.9
RHH5315_R3682
163.4
RHH5223_R3595
139.9
RHH5252_R3624
161.8
RHH5281_R3653
202.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.3
Schmiedel sample id
TPM
Classical monocyte TPM: 96.3
Samples: 91
Max TPM: 123.0
Min TPM: 68.6
MONOCYTES_1
123.0
MONOCYTES_2
118.4
MONOCYTES_3
116.1
MONOCYTES_4
115.5
MONOCYTES_5
115.0
MONOCYTES_6
113.7
MONOCYTES_7
113.7
MONOCYTES_8
113.0
MONOCYTES_9
111.1
MONOCYTES_10
110.7
MONOCYTES_11
110.5
MONOCYTES_12
109.2
MONOCYTES_13
108.7
MONOCYTES_14
108.4
MONOCYTES_15
108.4
MONOCYTES_16
108.0
MONOCYTES_17
106.9
MONOCYTES_18
106.4
MONOCYTES_19
105.8
MONOCYTES_20
105.0
MONOCYTES_21
104.9
MONOCYTES_22
104.6
MONOCYTES_23
104.5
MONOCYTES_24
104.3
MONOCYTES_25
104.1
MONOCYTES_26
104.0
MONOCYTES_27
103.5
MONOCYTES_28
103.1
MONOCYTES_29
102.7
MONOCYTES_30
102.2
MONOCYTES_31
101.6
MONOCYTES_32
101.5
MONOCYTES_33
100.9
MONOCYTES_34
100.7
MONOCYTES_35
100.6
MONOCYTES_36
99.3
MONOCYTES_37
99.3
MONOCYTES_38
99.1
MONOCYTES_39
99.0
MONOCYTES_40
98.2
MONOCYTES_41
97.9
MONOCYTES_42
97.7
MONOCYTES_43
97.0
MONOCYTES_44
96.7
MONOCYTES_45
96.5
MONOCYTES_46
96.3
MONOCYTES_47
96.3
MONOCYTES_48
95.6
MONOCYTES_49
95.6
MONOCYTES_50
95.5
MONOCYTES_51
94.9
MONOCYTES_52
94.4
MONOCYTES_53
94.3
MONOCYTES_54
94.3
MONOCYTES_55
94.1
MONOCYTES_56
93.3
MONOCYTES_57
93.2
MONOCYTES_58
92.4
MONOCYTES_59
91.0
MONOCYTES_60
90.3
MONOCYTES_61
90.1
MONOCYTES_62
89.9
MONOCYTES_63
89.9
MONOCYTES_64
89.1
MONOCYTES_65
88.8
MONOCYTES_66
88.4
MONOCYTES_67
88.3
MONOCYTES_68
88.0
MONOCYTES_69
87.5
MONOCYTES_70
86.8
MONOCYTES_71
86.6
MONOCYTES_72
86.6
MONOCYTES_73
86.0
MONOCYTES_74
85.0
MONOCYTES_75
84.9
MONOCYTES_76
84.4
MONOCYTES_77
84.2
MONOCYTES_78
84.2
MONOCYTES_79
84.0
MONOCYTES_80
83.5
MONOCYTES_81
83.3
MONOCYTES_82
83.0
MONOCYTES_83
82.2
MONOCYTES_84
81.7
MONOCYTES_85
81.1
MONOCYTES_86
80.6
MONOCYTES_87
77.7
MONOCYTES_88
77.6
MONOCYTES_89
76.2
MONOCYTES_90
75.8
MONOCYTES_91
68.6
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Non-classical monocyte TPM: 66.6
Samples: 90
Max TPM: 88.5
Min TPM: 39.4
M2_1
88.5
M2_2
86.6
M2_3
85.2
M2_4
83.7
M2_5
83.1
M2_6
82.6
M2_7
81.1
M2_8
80.5
M2_9
80.2
M2_10
78.8
M2_11
78.2
M2_12
77.9
M2_13
77.5
M2_14
77.1
M2_15
76.9
M2_16
76.7
M2_17
76.5
M2_18
75.4
M2_19
75.1
M2_20
74.9
M2_21
74.5
M2_22
74.4
M2_23
73.7
M2_24
73.6
M2_25
73.3
M2_26
73.2
M2_27
73.2
M2_28
73.2
M2_29
72.3
M2_30
72.2
M2_31
72.1
M2_32
72.0
M2_33
71.5
M2_34
70.9
M2_35
70.8
M2_36
70.6
M2_37
70.3
M2_38
70.3
M2_39
69.7
M2_40
69.6
M2_41
69.4
M2_42
69.1
M2_43
68.2
M2_44
67.9
M2_45
67.8
M2_46
67.8
M2_47
67.2
M2_48
67.2
M2_49
66.5
M2_50
66.1
M2_51
66.0
M2_52
66.0
M2_53
65.9
M2_54
65.4
M2_55
65.3
M2_56
65.2
M2_57
65.2
M2_58
65.0
M2_59
64.5
M2_60
64.5
M2_61
64.1
M2_62
63.1
M2_63
62.3
M2_64
61.2
M2_65
60.8
M2_66
60.5
M2_67
60.5
M2_68
59.2
M2_69
58.0
M2_70
57.8
M2_71
57.4
M2_72
57.2
M2_73
55.6
M2_74
54.9
M2_75
54.3
M2_76
53.3
M2_77
53.1
M2_78
52.8
M2_79
52.7
M2_80
52.3
M2_81
51.6
M2_82
51.5
M2_83
50.9
M2_84
50.6
M2_85
49.0
M2_86
48.6
M2_87
46.5
M2_88
42.9
M2_89
41.5
M2_90
39.4
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