A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
76.8
nTPM
Monaco:
176.0
nTPM
Schmiedel:
91.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.8
HPA sample
nTPM
NK-cell nTPM: 76.8
Samples: 6
Max nTPM: 100.1
Min nTPM: 37.6
P10809_1013
67.2
P10809_1033
100.1
P10809_1052
89.8
P10809_1071
85.4
P10809_1093
37.6
P10809_1103
80.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
176.0
Monaco sample
nTPM
NK-cell nTPM: 176.0
Samples: 4
Max nTPM: 227.6
Min nTPM: 127.0
RHH5316_R3683
168.1
RHH5224_R3596
227.6
RHH5253_R3625
127.0
RHH5282_R3654
181.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.0
Schmiedel sample id
TPM
NK-cell TPM: 91.0
Samples: 90
Max TPM: 119.6
Min TPM: 54.0
NK_1
119.6
NK_2
114.8
NK_3
110.3
NK_4
109.7
NK_5
109.5
NK_6
107.5
NK_7
107.4
NK_8
106.9
NK_9
106.7
NK_10
106.5
NK_11
106.1
NK_12
105.5
NK_13
105.2
NK_14
103.8
NK_15
103.7
NK_16
103.2
NK_17
103.1
NK_18
103.0
NK_19
102.8
NK_20
102.4
NK_21
101.6
NK_22
101.6
NK_23
100.6
NK_24
99.9
NK_25
99.9
NK_26
99.8
NK_27
98.8
NK_28
98.7
NK_29
98.6
NK_30
98.3
NK_31
97.3
NK_32
96.8
NK_33
96.4
NK_34
96.1
NK_35
95.9
NK_36
95.9
NK_37
95.7
NK_38
95.6
NK_39
94.9
NK_40
94.4
NK_41
94.2
NK_42
93.7
NK_43
93.6
NK_44
93.4
NK_45
92.6
NK_46
92.1
NK_47
91.9
NK_48
91.6
NK_49
91.2
NK_50
90.6
NK_51
90.4
NK_52
90.3
NK_53
89.5
NK_54
89.0
NK_55
88.5
NK_56
87.8
NK_57
87.6
NK_58
87.4
NK_59
86.7
NK_60
86.0
NK_61
85.3
NK_62
85.3
NK_63
85.3
NK_64
85.1
NK_65
84.8
NK_66
84.8
NK_67
82.3
NK_68
80.9
NK_69
80.7
NK_70
80.4
NK_71
79.7
NK_72
79.7
NK_73
78.6
NK_74
77.6
NK_75
76.3
NK_76
76.1
NK_77
75.2
NK_78
74.9
NK_79
74.7
NK_80
74.6
NK_81
74.3
NK_82
73.4
NK_83
72.3
NK_84
71.5
NK_85
70.4
NK_86
70.1
NK_87
68.5
NK_88
67.3
NK_89
62.0
NK_90
54.0
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