A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.2
nTPM
Monaco:
16.0
nTPM
Schmiedel:
73.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.2
HPA sample
nTPM
Memory B-cell nTPM: 9.7
Samples: 6
Max nTPM: 12.8
Min nTPM: 6.2
P10809_1017
8.2
P10809_1025
9.0
P10809_1044
11.3
P10809_1063
12.8
P10809_1092
10.9
P10809_1105
6.2
Naive B-cell nTPM: 10.2
Samples: 6
Max nTPM: 16.1
Min nTPM: 6.5
P10809_1011
7.5
P10809_1029
9.9
P10809_1048
6.5
P10809_1067
8.5
P10809_1091
16.1
P10809_1104
12.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 9.9
Samples: 4
Max nTPM: 16.4
Min nTPM: 4.8
RHH5310_R3677
5.4
RHH5218_R3590
12.9
RHH5247_R3619
4.8
RHH5276_R3648
16.4
Naive B-cell nTPM: 9.5
Samples: 4
Max nTPM: 14.0
Min nTPM: 4.7
RHH5308_R3675
6.0
RHH5216_R3588
4.7
RHH5245_R3617
14.0
RHH5274_R3646
13.2
Non-switched memory B-cell nTPM: 10.2
Samples: 4
Max nTPM: 12.0
Min nTPM: 6.9
RHH5309_R3676
11.9
RHH5217_R3589
10.0
RHH5246_R3618
12.0
RHH5275_R3647
6.9
Plasmablast nTPM: 16.0
Samples: 4
Max nTPM: 24.4
Min nTPM: 4.9
RHH5312_R3679
17.4
RHH5220_R3592
24.4
RHH5249_R3621
4.9
RHH5278_R3650
17.2
Switched memory B-cell nTPM: 9.2
Samples: 4
Max nTPM: 13.7
Min nTPM: 6.0
RHH5311_R3678
10.0
RHH5219_R3591
7.0
RHH5248_R3620
13.7
RHH5277_R3649
6.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.4
Schmiedel sample id
TPM
Naive B-cell TPM: 73.4
Samples: 91
Max TPM: 102.4
Min TPM: 49.8
B_CELL_NAIVE_1
102.4
B_CELL_NAIVE_2
101.1
B_CELL_NAIVE_3
99.7
B_CELL_NAIVE_4
98.6
B_CELL_NAIVE_5
92.2
B_CELL_NAIVE_6
89.4
B_CELL_NAIVE_7
88.8
B_CELL_NAIVE_8
88.0
B_CELL_NAIVE_9
86.4
B_CELL_NAIVE_10
85.6
B_CELL_NAIVE_11
85.2
B_CELL_NAIVE_12
85.0
B_CELL_NAIVE_13
84.6
B_CELL_NAIVE_14
84.3
B_CELL_NAIVE_15
83.5
B_CELL_NAIVE_16
83.3
B_CELL_NAIVE_17
82.6
B_CELL_NAIVE_18
82.4
B_CELL_NAIVE_19
81.8
B_CELL_NAIVE_20
81.8
B_CELL_NAIVE_21
81.1
B_CELL_NAIVE_22
81.1
B_CELL_NAIVE_23
80.8
B_CELL_NAIVE_24
80.5
B_CELL_NAIVE_25
80.5
B_CELL_NAIVE_26
79.9
B_CELL_NAIVE_27
78.7
B_CELL_NAIVE_28
77.8
B_CELL_NAIVE_29
76.5
B_CELL_NAIVE_30
76.4
B_CELL_NAIVE_31
76.2
B_CELL_NAIVE_32
76.2
B_CELL_NAIVE_33
75.8
B_CELL_NAIVE_34
75.8
B_CELL_NAIVE_35
75.4
B_CELL_NAIVE_36
75.0
B_CELL_NAIVE_37
74.8
B_CELL_NAIVE_38
74.8
B_CELL_NAIVE_39
74.6
B_CELL_NAIVE_40
74.2
B_CELL_NAIVE_41
74.1
B_CELL_NAIVE_42
73.7
B_CELL_NAIVE_43
73.5
B_CELL_NAIVE_44
73.3
B_CELL_NAIVE_45
73.1
B_CELL_NAIVE_46
72.7
B_CELL_NAIVE_47
72.6
B_CELL_NAIVE_48
72.5
B_CELL_NAIVE_49
72.3
B_CELL_NAIVE_50
72.0
B_CELL_NAIVE_51
71.8
B_CELL_NAIVE_52
71.8
B_CELL_NAIVE_53
71.4
B_CELL_NAIVE_54
71.3
B_CELL_NAIVE_55
71.2
B_CELL_NAIVE_56
71.2
B_CELL_NAIVE_57
71.0
B_CELL_NAIVE_58
71.0
B_CELL_NAIVE_59
70.4
B_CELL_NAIVE_60
69.6
B_CELL_NAIVE_61
69.5
B_CELL_NAIVE_62
69.5
B_CELL_NAIVE_63
69.2
B_CELL_NAIVE_64
69.1
B_CELL_NAIVE_65
68.9
B_CELL_NAIVE_66
67.6
B_CELL_NAIVE_67
67.1
B_CELL_NAIVE_68
67.0
B_CELL_NAIVE_69
66.8
B_CELL_NAIVE_70
66.4
B_CELL_NAIVE_71
65.8
B_CELL_NAIVE_72
65.7
B_CELL_NAIVE_73
64.7
B_CELL_NAIVE_74
63.7
B_CELL_NAIVE_75
62.3
B_CELL_NAIVE_76
61.8
B_CELL_NAIVE_77
61.5
B_CELL_NAIVE_78
61.3
B_CELL_NAIVE_79
61.0
B_CELL_NAIVE_80
60.7
B_CELL_NAIVE_81
59.9
B_CELL_NAIVE_82
58.6
B_CELL_NAIVE_83
58.0
B_CELL_NAIVE_84
57.6
B_CELL_NAIVE_85
56.9
B_CELL_NAIVE_86
56.8
B_CELL_NAIVE_87
56.0
B_CELL_NAIVE_88
54.3
B_CELL_NAIVE_89
53.5
B_CELL_NAIVE_90
53.1
B_CELL_NAIVE_91
49.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
