A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.6
nTPM
Monaco:
14.1
nTPM
Schmiedel:
89.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.6
HPA sample
nTPM
NK-cell nTPM: 10.7
Samples: 6
Max nTPM: 18.9
Min nTPM: 0.0
P10809_1013
7.8
P10809_1033
18.9
P10809_1052
15.7
P10809_1071
10.5
P10809_1093
0.0
P10809_1103
11.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
Monaco sample
nTPM
NK-cell nTPM: 14.0
Samples: 4
Max nTPM: 17.7
Min nTPM: 9.2
RHH5316_R3683
14.4
RHH5224_R3596
9.2
RHH5253_R3625
14.8
RHH5282_R3654
17.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.6
Schmiedel sample id
TPM
NK-cell TPM: 89.6
Samples: 90
Max TPM: 143.8
Min TPM: 57.0
NK_1
143.8
NK_2
138.3
NK_3
132.0
NK_4
131.4
NK_5
124.2
NK_6
119.8
NK_7
118.9
NK_8
115.5
NK_9
112.3
NK_10
111.0
NK_11
109.9
NK_12
107.0
NK_13
106.9
NK_14
106.9
NK_15
106.8
NK_16
106.5
NK_17
106.4
NK_18
105.1
NK_19
104.0
NK_20
103.9
NK_21
103.8
NK_22
103.5
NK_23
103.2
NK_24
102.6
NK_25
102.6
NK_26
102.4
NK_27
102.4
NK_28
101.0
NK_29
98.6
NK_30
98.6
NK_31
98.5
NK_32
97.8
NK_33
97.8
NK_34
97.7
NK_35
97.3
NK_36
96.1
NK_37
95.2
NK_38
95.1
NK_39
94.6
NK_40
94.5
NK_41
91.2
NK_42
91.2
NK_43
90.8
NK_44
90.7
NK_45
90.4
NK_46
90.3
NK_47
88.1
NK_48
87.5
NK_49
87.1
NK_50
85.8
NK_51
84.7
NK_52
84.1
NK_53
82.8
NK_54
82.0
NK_55
81.9
NK_56
79.5
NK_57
79.4
NK_58
78.3
NK_59
78.2
NK_60
78.0
NK_61
77.7
NK_62
76.6
NK_63
76.4
NK_64
76.3
NK_65
76.1
NK_66
75.8
NK_67
75.8
NK_68
74.8
NK_69
74.7
NK_70
74.2
NK_71
73.8
NK_72
72.9
NK_73
71.8
NK_74
70.0
NK_75
69.5
NK_76
69.4
NK_77
67.4
NK_78
67.2
NK_79
67.0
NK_80
66.8
NK_81
66.1
NK_82
66.0
NK_83
65.3
NK_84
64.6
NK_85
59.7
NK_86
59.5
NK_87
59.1
NK_88
58.1
NK_89
57.2
NK_90
57.0
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