A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.8
nTPM
Monaco:
19.4
nTPM
Schmiedel:
66.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.8
HPA sample
nTPM
Classical monocyte nTPM: 16.6
Samples: 6
Max nTPM: 26.3
Min nTPM: 11.0
P10809_1003
16.0
P10809_1020
17.9
P10809_1039
26.3
P10809_1058
11.0
P10809_1080
15.2
P10809_1107
13.2
Intermediate monocyte nTPM: 15.7
Samples: 6
Max nTPM: 21.6
Min nTPM: 11.9
P10809_1004
16.6
P10809_1023
21.6
P10809_1042
11.9
P10809_1061
16.8
P10809_1081
13.9
P10809_1108
13.5
Non-classical monocyte nTPM: 22.8
Samples: 5
Max nTPM: 44.2
Min nTPM: 13.0
P10809_1005
18.7
P10809_1053
20.1
P10809_1072
44.2
P10809_1082
13.0
P10809_1109
18.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.4
Monaco sample
nTPM
Classical monocyte nTPM: 18.8
Samples: 4
Max nTPM: 30.7
Min nTPM: 10.4
RHH5313_R3680
30.7
RHH5221_R3593
10.4
RHH5250_R3622
14.0
RHH5279_R3651
20.1
Intermediate monocyte nTPM: 17.3
Samples: 4
Max nTPM: 23.1
Min nTPM: 12.6
RHH5314_R3681
17.7
RHH5222_R3594
12.6
RHH5251_R3623
15.8
RHH5280_R3652
23.1
Non-classical monocyte nTPM: 19.4
Samples: 4
Max nTPM: 28.4
Min nTPM: 10.5
RHH5315_R3682
28.4
RHH5223_R3595
10.5
RHH5252_R3624
17.7
RHH5281_R3653
21.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.2
Schmiedel sample id
TPM
Classical monocyte TPM: 62.3
Samples: 91
Max TPM: 85.8
Min TPM: 46.9
MONOCYTES_1
85.8
MONOCYTES_2
83.6
MONOCYTES_3
79.3
MONOCYTES_4
77.5
MONOCYTES_5
76.3
MONOCYTES_6
75.9
MONOCYTES_7
74.8
MONOCYTES_8
74.0
MONOCYTES_9
73.9
MONOCYTES_10
73.6
MONOCYTES_11
73.4
MONOCYTES_12
73.0
MONOCYTES_13
72.1
MONOCYTES_14
70.6
MONOCYTES_15
70.4
MONOCYTES_16
70.4
MONOCYTES_17
70.2
MONOCYTES_18
69.0
MONOCYTES_19
69.0
MONOCYTES_20
68.9
MONOCYTES_21
68.8
MONOCYTES_22
68.7
MONOCYTES_23
68.4
MONOCYTES_24
67.5
MONOCYTES_25
66.8
MONOCYTES_26
66.6
MONOCYTES_27
66.3
MONOCYTES_28
66.0
MONOCYTES_29
66.0
MONOCYTES_30
65.9
MONOCYTES_31
65.6
MONOCYTES_32
64.8
MONOCYTES_33
64.5
MONOCYTES_34
64.2
MONOCYTES_35
64.0
MONOCYTES_36
63.5
MONOCYTES_37
63.3
MONOCYTES_38
63.3
MONOCYTES_39
63.2
MONOCYTES_40
63.1
MONOCYTES_41
62.9
MONOCYTES_42
62.4
MONOCYTES_43
62.2
MONOCYTES_44
61.7
MONOCYTES_45
61.6
MONOCYTES_46
61.5
MONOCYTES_47
61.5
MONOCYTES_48
61.3
MONOCYTES_49
61.2
MONOCYTES_50
61.2
MONOCYTES_51
61.2
MONOCYTES_52
61.1
MONOCYTES_53
60.5
MONOCYTES_54
60.2
MONOCYTES_55
59.4
MONOCYTES_56
58.8
MONOCYTES_57
58.6
MONOCYTES_58
58.6
MONOCYTES_59
58.5
MONOCYTES_60
58.5
MONOCYTES_61
58.0
MONOCYTES_62
57.2
MONOCYTES_63
57.2
MONOCYTES_64
57.2
MONOCYTES_65
57.1
MONOCYTES_66
56.9
MONOCYTES_67
56.1
MONOCYTES_68
55.8
MONOCYTES_69
55.5
MONOCYTES_70
55.4
MONOCYTES_71
55.4
MONOCYTES_72
54.9
MONOCYTES_73
54.7
MONOCYTES_74
54.7
MONOCYTES_75
53.9
MONOCYTES_76
53.8
MONOCYTES_77
53.4
MONOCYTES_78
53.3
MONOCYTES_79
52.9
MONOCYTES_80
52.7
MONOCYTES_81
52.7
MONOCYTES_82
52.7
MONOCYTES_83
52.6
MONOCYTES_84
52.1
MONOCYTES_85
50.8
MONOCYTES_86
50.4
MONOCYTES_87
49.5
MONOCYTES_88
49.4
MONOCYTES_89
49.3
MONOCYTES_90
48.1
MONOCYTES_91
46.9
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Non-classical monocyte TPM: 66.2
Samples: 90
Max TPM: 109.3
Min TPM: 48.0
M2_1
109.3
M2_2
95.5
M2_3
95.1
M2_4
88.4
M2_5
86.3
M2_6
86.1
M2_7
85.2
M2_8
84.7
M2_9
84.2
M2_10
82.8
M2_11
79.8
M2_12
79.7
M2_13
79.4
M2_14
78.5
M2_15
77.2
M2_16
77.1
M2_17
74.0
M2_18
73.3
M2_19
73.2
M2_20
73.2
M2_21
73.2
M2_22
72.4
M2_23
70.6
M2_24
70.6
M2_25
70.6
M2_26
70.1
M2_27
69.8
M2_28
69.2
M2_29
69.1
M2_30
68.9
M2_31
68.6
M2_32
67.8
M2_33
67.6
M2_34
67.4
M2_35
67.1
M2_36
66.5
M2_37
66.3
M2_38
66.0
M2_39
65.4
M2_40
65.4
M2_41
65.1
M2_42
64.9
M2_43
64.7
M2_44
64.5
M2_45
64.4
M2_46
64.3
M2_47
64.2
M2_48
64.1
M2_49
64.0
M2_50
64.0
M2_51
63.8
M2_52
63.8
M2_53
62.9
M2_54
62.2
M2_55
62.2
M2_56
61.7
M2_57
61.0
M2_58
60.9
M2_59
60.8
M2_60
60.2
M2_61
60.2
M2_62
60.2
M2_63
59.9
M2_64
59.8
M2_65
59.3
M2_66
59.1
M2_67
59.1
M2_68
59.0
M2_69
58.9
M2_70
58.8
M2_71
57.9
M2_72
57.7
M2_73
56.9
M2_74
56.6
M2_75
56.4
M2_76
56.2
M2_77
56.1
M2_78
55.6
M2_79
55.0
M2_80
53.0
M2_81
52.7
M2_82
52.1
M2_83
52.0
M2_84
51.6
M2_85
50.1
M2_86
49.9
M2_87
49.6
M2_88
48.5
M2_89
48.4
M2_90
48.0
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