A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.8
nTPM
Monaco:
272.2
nTPM
Schmiedel:
148.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.8
HPA sample
nTPM
Memory B-cell nTPM: 38.9
Samples: 6
Max nTPM: 46.7
Min nTPM: 30.5
P10809_1017
46.7
P10809_1025
35.8
P10809_1044
46.3
P10809_1063
30.5
P10809_1092
42.0
P10809_1105
32.0
Naive B-cell nTPM: 42.8
Samples: 6
Max nTPM: 54.0
Min nTPM: 30.6
P10809_1011
40.9
P10809_1029
36.6
P10809_1048
54.0
P10809_1067
30.6
P10809_1091
53.2
P10809_1104
41.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
272.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 244.9
Samples: 4
Max nTPM: 309.5
Min nTPM: 179.9
RHH5310_R3677
179.9
RHH5218_R3590
220.7
RHH5247_R3619
309.5
RHH5276_R3648
269.4
Naive B-cell nTPM: 252.2
Samples: 4
Max nTPM: 368.1
Min nTPM: 152.6
RHH5308_R3675
241.5
RHH5216_R3588
152.6
RHH5245_R3617
368.1
RHH5274_R3646
246.6
Non-switched memory B-cell nTPM: 194.7
Samples: 4
Max nTPM: 261.1
Min nTPM: 124.5
RHH5309_R3676
190.1
RHH5217_R3589
124.5
RHH5246_R3618
261.1
RHH5275_R3647
203.0
Plasmablast nTPM: 272.1
Samples: 4
Max nTPM: 339.7
Min nTPM: 146.9
RHH5312_R3679
146.9
RHH5220_R3592
320.6
RHH5249_R3621
339.7
RHH5278_R3650
281.3
Switched memory B-cell nTPM: 166.0
Samples: 4
Max nTPM: 220.0
Min nTPM: 108.8
RHH5311_R3678
108.8
RHH5219_R3591
186.6
RHH5248_R3620
148.6
RHH5277_R3649
220.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.1
Schmiedel sample id
TPM
Naive B-cell TPM: 148.1
Samples: 91
Max TPM: 224.4
Min TPM: 89.8
B_CELL_NAIVE_1
224.4
B_CELL_NAIVE_2
218.7
B_CELL_NAIVE_3
212.1
B_CELL_NAIVE_4
210.1
B_CELL_NAIVE_5
200.4
B_CELL_NAIVE_6
197.1
B_CELL_NAIVE_7
194.2
B_CELL_NAIVE_8
191.0
B_CELL_NAIVE_9
188.9
B_CELL_NAIVE_10
185.7
B_CELL_NAIVE_11
172.7
B_CELL_NAIVE_12
170.1
B_CELL_NAIVE_13
170.0
B_CELL_NAIVE_14
165.8
B_CELL_NAIVE_15
165.3
B_CELL_NAIVE_16
165.2
B_CELL_NAIVE_17
163.4
B_CELL_NAIVE_18
163.3
B_CELL_NAIVE_19
162.9
B_CELL_NAIVE_20
162.8
B_CELL_NAIVE_21
162.5
B_CELL_NAIVE_22
161.9
B_CELL_NAIVE_23
160.5
B_CELL_NAIVE_24
159.9
B_CELL_NAIVE_25
159.7
B_CELL_NAIVE_26
159.5
B_CELL_NAIVE_27
159.4
B_CELL_NAIVE_28
157.9
B_CELL_NAIVE_29
157.7
B_CELL_NAIVE_30
157.1
B_CELL_NAIVE_31
155.6
B_CELL_NAIVE_32
155.3
B_CELL_NAIVE_33
155.1
B_CELL_NAIVE_34
154.6
B_CELL_NAIVE_35
153.2
B_CELL_NAIVE_36
151.4
B_CELL_NAIVE_37
151.3
B_CELL_NAIVE_38
150.8
B_CELL_NAIVE_39
150.7
B_CELL_NAIVE_40
150.2
B_CELL_NAIVE_41
150.1
B_CELL_NAIVE_42
148.3
B_CELL_NAIVE_43
148.2
B_CELL_NAIVE_44
147.8
B_CELL_NAIVE_45
147.0
B_CELL_NAIVE_46
146.9
B_CELL_NAIVE_47
145.7
B_CELL_NAIVE_48
145.6
B_CELL_NAIVE_49
145.5
B_CELL_NAIVE_50
144.7
B_CELL_NAIVE_51
144.4
B_CELL_NAIVE_52
143.9
B_CELL_NAIVE_53
142.7
B_CELL_NAIVE_54
140.6
B_CELL_NAIVE_55
139.5
B_CELL_NAIVE_56
138.7
B_CELL_NAIVE_57
138.4
B_CELL_NAIVE_58
138.0
B_CELL_NAIVE_59
137.9
B_CELL_NAIVE_60
137.9
B_CELL_NAIVE_61
137.8
B_CELL_NAIVE_62
137.7
B_CELL_NAIVE_63
137.1
B_CELL_NAIVE_64
136.1
B_CELL_NAIVE_65
136.1
B_CELL_NAIVE_66
133.4
B_CELL_NAIVE_67
131.9
B_CELL_NAIVE_68
131.3
B_CELL_NAIVE_69
131.0
B_CELL_NAIVE_70
130.3
B_CELL_NAIVE_71
129.8
B_CELL_NAIVE_72
126.9
B_CELL_NAIVE_73
126.1
B_CELL_NAIVE_74
126.0
B_CELL_NAIVE_75
125.6
B_CELL_NAIVE_76
125.5
B_CELL_NAIVE_77
125.5
B_CELL_NAIVE_78
124.3
B_CELL_NAIVE_79
124.1
B_CELL_NAIVE_80
123.1
B_CELL_NAIVE_81
122.6
B_CELL_NAIVE_82
118.2
B_CELL_NAIVE_83
117.6
B_CELL_NAIVE_84
115.5
B_CELL_NAIVE_85
112.4
B_CELL_NAIVE_86
110.1
B_CELL_NAIVE_87
108.9
B_CELL_NAIVE_88
107.7
B_CELL_NAIVE_89
103.7
B_CELL_NAIVE_90
90.1
B_CELL_NAIVE_91
89.8
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