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BETA
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  • PAPOLA
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:42.8 nTPM
Monaco:272.2 nTPM
Schmiedel:148.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

42.8
HPA sample nTPM
Memory B-cell
nTPM: 38.9
Samples: 6

Max nTPM: 46.7
Min nTPM: 30.5
P10809_1017 46.7
P10809_1025 35.8
P10809_1044 46.3
P10809_1063 30.5
P10809_1092 42.0
P10809_1105 32.0
Naive B-cell
nTPM: 42.8
Samples: 6

Max nTPM: 54.0
Min nTPM: 30.6
P10809_1011 40.9
P10809_1029 36.6
P10809_1048 54.0
P10809_1067 30.6
P10809_1091 53.2
P10809_1104 41.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

272.2
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 244.9
Samples: 4

Max nTPM: 309.5
Min nTPM: 179.9
RHH5310_R3677 179.9
RHH5218_R3590 220.7
RHH5247_R3619 309.5
RHH5276_R3648 269.4
Naive B-cell
nTPM: 252.2
Samples: 4

Max nTPM: 368.1
Min nTPM: 152.6
RHH5308_R3675 241.5
RHH5216_R3588 152.6
RHH5245_R3617 368.1
RHH5274_R3646 246.6
Non-switched memory B-cell
nTPM: 194.7
Samples: 4

Max nTPM: 261.1
Min nTPM: 124.5
RHH5309_R3676 190.1
RHH5217_R3589 124.5
RHH5246_R3618 261.1
RHH5275_R3647 203.0
Plasmablast
nTPM: 272.1
Samples: 4

Max nTPM: 339.7
Min nTPM: 146.9
RHH5312_R3679 146.9
RHH5220_R3592 320.6
RHH5249_R3621 339.7
RHH5278_R3650 281.3
Switched memory B-cell
nTPM: 166.0
Samples: 4

Max nTPM: 220.0
Min nTPM: 108.8
RHH5311_R3678 108.8
RHH5219_R3591 186.6
RHH5248_R3620 148.6
RHH5277_R3649 220.0

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

148.1
Schmiedel sample id TPM
Naive B-cell
TPM: 148.1
Samples: 91

Max TPM: 224.4
Min TPM: 89.8
B_CELL_NAIVE_1 224.4
B_CELL_NAIVE_2 218.7
B_CELL_NAIVE_3 212.1
B_CELL_NAIVE_4 210.1
B_CELL_NAIVE_5 200.4
B_CELL_NAIVE_6 197.1
B_CELL_NAIVE_7 194.2
B_CELL_NAIVE_8 191.0
B_CELL_NAIVE_9 188.9
B_CELL_NAIVE_10 185.7
B_CELL_NAIVE_11 172.7
B_CELL_NAIVE_12 170.1
B_CELL_NAIVE_13 170.0
B_CELL_NAIVE_14 165.8
B_CELL_NAIVE_15 165.3
B_CELL_NAIVE_16 165.2
B_CELL_NAIVE_17 163.4
B_CELL_NAIVE_18 163.3
B_CELL_NAIVE_19 162.9
B_CELL_NAIVE_20 162.8
B_CELL_NAIVE_21 162.5
B_CELL_NAIVE_22 161.9
B_CELL_NAIVE_23 160.5
B_CELL_NAIVE_24 159.9
B_CELL_NAIVE_25 159.7
B_CELL_NAIVE_26 159.5
B_CELL_NAIVE_27 159.4
B_CELL_NAIVE_28 157.9
B_CELL_NAIVE_29 157.7
B_CELL_NAIVE_30 157.1
B_CELL_NAIVE_31 155.6
B_CELL_NAIVE_32 155.3
B_CELL_NAIVE_33 155.1
B_CELL_NAIVE_34 154.6
B_CELL_NAIVE_35 153.2
B_CELL_NAIVE_36 151.4
B_CELL_NAIVE_37 151.3
B_CELL_NAIVE_38 150.8
B_CELL_NAIVE_39 150.7
B_CELL_NAIVE_40 150.2
B_CELL_NAIVE_41 150.1
B_CELL_NAIVE_42 148.3
B_CELL_NAIVE_43 148.2
B_CELL_NAIVE_44 147.8
B_CELL_NAIVE_45 147.0
B_CELL_NAIVE_46 146.9
B_CELL_NAIVE_47 145.7
B_CELL_NAIVE_48 145.6
B_CELL_NAIVE_49 145.5
B_CELL_NAIVE_50 144.7
B_CELL_NAIVE_51 144.4
B_CELL_NAIVE_52 143.9
B_CELL_NAIVE_53 142.7
B_CELL_NAIVE_54 140.6
B_CELL_NAIVE_55 139.5
B_CELL_NAIVE_56 138.7
B_CELL_NAIVE_57 138.4
B_CELL_NAIVE_58 138.0
B_CELL_NAIVE_59 137.9
B_CELL_NAIVE_60 137.9
B_CELL_NAIVE_61 137.8
B_CELL_NAIVE_62 137.7
B_CELL_NAIVE_63 137.1
B_CELL_NAIVE_64 136.1
B_CELL_NAIVE_65 136.1
B_CELL_NAIVE_66 133.4
B_CELL_NAIVE_67 131.9
B_CELL_NAIVE_68 131.3
B_CELL_NAIVE_69 131.0
B_CELL_NAIVE_70 130.3
B_CELL_NAIVE_71 129.8
B_CELL_NAIVE_72 126.9
B_CELL_NAIVE_73 126.1
B_CELL_NAIVE_74 126.0
B_CELL_NAIVE_75 125.6
B_CELL_NAIVE_76 125.5
B_CELL_NAIVE_77 125.5
B_CELL_NAIVE_78 124.3
B_CELL_NAIVE_79 124.1
B_CELL_NAIVE_80 123.1
B_CELL_NAIVE_81 122.6
B_CELL_NAIVE_82 118.2
B_CELL_NAIVE_83 117.6
B_CELL_NAIVE_84 115.5
B_CELL_NAIVE_85 112.4
B_CELL_NAIVE_86 110.1
B_CELL_NAIVE_87 108.9
B_CELL_NAIVE_88 107.7
B_CELL_NAIVE_89 103.7
B_CELL_NAIVE_90 90.1
B_CELL_NAIVE_91 89.8
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