A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.3
nTPM
Monaco:
244.2
nTPM
Schmiedel:
111.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.3
HPA sample
nTPM
Classical monocyte nTPM: 32.0
Samples: 6
Max nTPM: 44.3
Min nTPM: 16.2
P10809_1003
38.0
P10809_1020
28.6
P10809_1039
43.6
P10809_1058
21.2
P10809_1080
16.2
P10809_1107
44.3
Intermediate monocyte nTPM: 39.3
Samples: 6
Max nTPM: 58.4
Min nTPM: 13.9
P10809_1004
44.2
P10809_1023
37.3
P10809_1042
31.4
P10809_1061
58.4
P10809_1081
13.9
P10809_1108
50.7
Non-classical monocyte nTPM: 37.8
Samples: 5
Max nTPM: 58.9
Min nTPM: 19.1
P10809_1005
50.3
P10809_1053
19.1
P10809_1072
23.6
P10809_1082
37.2
P10809_1109
58.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
244.2
Monaco sample
nTPM
Classical monocyte nTPM: 211.6
Samples: 4
Max nTPM: 265.4
Min nTPM: 186.1
RHH5313_R3680
186.1
RHH5221_R3593
265.4
RHH5250_R3622
189.5
RHH5279_R3651
205.4
Intermediate monocyte nTPM: 194.1
Samples: 4
Max nTPM: 223.2
Min nTPM: 161.5
RHH5314_R3681
207.7
RHH5222_R3594
223.2
RHH5251_R3623
183.9
RHH5280_R3652
161.5
Non-classical monocyte nTPM: 244.2
Samples: 4
Max nTPM: 311.5
Min nTPM: 171.8
RHH5315_R3682
234.8
RHH5223_R3595
311.5
RHH5252_R3624
258.8
RHH5281_R3653
171.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
111.1
Schmiedel sample id
TPM
Classical monocyte TPM: 74.6
Samples: 91
Max TPM: 106.9
Min TPM: 47.5
MONOCYTES_1
106.9
MONOCYTES_2
95.3
MONOCYTES_3
93.6
MONOCYTES_4
92.2
MONOCYTES_5
91.8
MONOCYTES_6
91.6
MONOCYTES_7
91.5
MONOCYTES_8
91.5
MONOCYTES_9
91.3
MONOCYTES_10
90.7
MONOCYTES_11
90.7
MONOCYTES_12
89.6
MONOCYTES_13
88.5
MONOCYTES_14
88.0
MONOCYTES_15
87.6
MONOCYTES_16
87.1
MONOCYTES_17
87.0
MONOCYTES_18
86.1
MONOCYTES_19
86.1
MONOCYTES_20
85.2
MONOCYTES_21
84.4
MONOCYTES_22
82.8
MONOCYTES_23
82.7
MONOCYTES_24
82.7
MONOCYTES_25
81.6
MONOCYTES_26
81.0
MONOCYTES_27
80.8
MONOCYTES_28
79.3
MONOCYTES_29
79.1
MONOCYTES_30
78.8
MONOCYTES_31
78.5
MONOCYTES_32
78.0
MONOCYTES_33
77.9
MONOCYTES_34
77.9
MONOCYTES_35
77.3
MONOCYTES_36
77.3
MONOCYTES_37
77.3
MONOCYTES_38
77.2
MONOCYTES_39
75.9
MONOCYTES_40
75.7
MONOCYTES_41
75.5
MONOCYTES_42
75.0
MONOCYTES_43
74.4
MONOCYTES_44
74.2
MONOCYTES_45
74.2
MONOCYTES_46
73.8
MONOCYTES_47
73.7
MONOCYTES_48
73.3
MONOCYTES_49
73.0
MONOCYTES_50
71.7
MONOCYTES_51
71.3
MONOCYTES_52
70.9
MONOCYTES_53
70.7
MONOCYTES_54
70.5
MONOCYTES_55
70.3
MONOCYTES_56
70.1
MONOCYTES_57
70.0
MONOCYTES_58
69.9
MONOCYTES_59
69.8
MONOCYTES_60
69.6
MONOCYTES_61
69.1
MONOCYTES_62
68.6
MONOCYTES_63
68.1
MONOCYTES_64
67.9
MONOCYTES_65
67.9
MONOCYTES_66
67.8
MONOCYTES_67
67.4
MONOCYTES_68
66.6
MONOCYTES_69
66.4
MONOCYTES_70
66.2
MONOCYTES_71
66.2
MONOCYTES_72
65.8
MONOCYTES_73
65.6
MONOCYTES_74
65.5
MONOCYTES_75
65.5
MONOCYTES_76
64.3
MONOCYTES_77
63.2
MONOCYTES_78
62.9
MONOCYTES_79
62.4
MONOCYTES_80
62.1
MONOCYTES_81
61.8
MONOCYTES_82
61.7
MONOCYTES_83
60.4
MONOCYTES_84
59.6
MONOCYTES_85
59.2
MONOCYTES_86
59.0
MONOCYTES_87
58.6
MONOCYTES_88
56.4
MONOCYTES_89
56.1
MONOCYTES_90
52.9
MONOCYTES_91
47.5
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Non-classical monocyte TPM: 111.1
Samples: 90
Max TPM: 176.7
Min TPM: 62.4
M2_1
176.7
M2_2
164.9
M2_3
162.0
M2_4
157.5
M2_5
155.1
M2_6
151.7
M2_7
146.7
M2_8
144.1
M2_9
138.6
M2_10
136.4
M2_11
133.7
M2_12
131.8
M2_13
129.3
M2_14
127.0
M2_15
125.8
M2_16
123.8
M2_17
122.9
M2_18
122.9
M2_19
121.1
M2_20
120.9
M2_21
120.8
M2_22
120.7
M2_23
120.2
M2_24
119.8
M2_25
118.9
M2_26
118.0
M2_27
116.2
M2_28
116.0
M2_29
115.9
M2_30
115.8
M2_31
115.2
M2_32
114.5
M2_33
114.4
M2_34
114.1
M2_35
114.1
M2_36
114.0
M2_37
113.7
M2_38
113.5
M2_39
113.3
M2_40
112.8
M2_41
112.6
M2_42
111.0
M2_43
110.1
M2_44
109.8
M2_45
108.2
M2_46
108.1
M2_47
108.0
M2_48
107.9
M2_49
107.1
M2_50
105.5
M2_51
104.8
M2_52
104.8
M2_53
104.6
M2_54
104.0
M2_55
103.4
M2_56
103.1
M2_57
102.7
M2_58
102.0
M2_59
101.6
M2_60
101.6
M2_61
101.0
M2_62
99.9
M2_63
99.9
M2_64
99.7
M2_65
98.7
M2_66
98.4
M2_67
97.1
M2_68
96.6
M2_69
96.1
M2_70
95.7
M2_71
95.3
M2_72
95.1
M2_73
95.1
M2_74
95.0
M2_75
94.9
M2_76
94.5
M2_77
94.2
M2_78
92.9
M2_79
92.2
M2_80
90.3
M2_81
90.1
M2_82
89.9
M2_83
89.2
M2_84
89.1
M2_85
88.2
M2_86
86.1
M2_87
84.3
M2_88
82.8
M2_89
81.3
M2_90
62.4
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