A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
41.4
nTPM
Monaco:
185.5
nTPM
Schmiedel:
86.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.4
HPA sample
nTPM
NK-cell nTPM: 41.4
Samples: 6
Max nTPM: 78.2
Min nTPM: 19.7
P10809_1013
58.5
P10809_1033
23.5
P10809_1052
19.7
P10809_1071
36.9
P10809_1093
78.2
P10809_1103
31.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
185.5
Monaco sample
nTPM
NK-cell nTPM: 185.6
Samples: 4
Max nTPM: 230.2
Min nTPM: 140.1
RHH5316_R3683
163.1
RHH5224_R3596
140.1
RHH5253_R3625
208.8
RHH5282_R3654
230.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.4
Schmiedel sample id
TPM
NK-cell TPM: 86.4
Samples: 90
Max TPM: 146.9
Min TPM: 55.1
NK_1
146.9
NK_2
137.2
NK_3
132.6
NK_4
132.1
NK_5
120.1
NK_6
120.0
NK_7
114.4
NK_8
113.8
NK_9
111.0
NK_10
106.5
NK_11
105.7
NK_12
105.0
NK_13
104.1
NK_14
102.5
NK_15
102.2
NK_16
100.9
NK_17
100.0
NK_18
99.6
NK_19
98.3
NK_20
97.6
NK_21
97.5
NK_22
97.4
NK_23
97.1
NK_24
97.0
NK_25
96.9
NK_26
96.6
NK_27
94.6
NK_28
93.9
NK_29
92.2
NK_30
92.0
NK_31
91.5
NK_32
91.2
NK_33
90.8
NK_34
90.3
NK_35
89.3
NK_36
88.8
NK_37
87.8
NK_38
86.5
NK_39
86.2
NK_40
85.7
NK_41
85.5
NK_42
85.4
NK_43
84.4
NK_44
84.2
NK_45
82.9
NK_46
82.9
NK_47
82.8
NK_48
81.7
NK_49
81.0
NK_50
81.0
NK_51
80.9
NK_52
80.4
NK_53
79.7
NK_54
78.8
NK_55
78.2
NK_56
78.1
NK_57
77.7
NK_58
77.2
NK_59
76.5
NK_60
76.4
NK_61
75.9
NK_62
75.7
NK_63
75.0
NK_64
73.5
NK_65
73.4
NK_66
73.3
NK_67
72.6
NK_68
72.4
NK_69
72.2
NK_70
71.8
NK_71
71.6
NK_72
71.3
NK_73
71.0
NK_74
70.9
NK_75
70.8
NK_76
70.6
NK_77
70.5
NK_78
70.5
NK_79
70.0
NK_80
68.8
NK_81
67.4
NK_82
66.8
NK_83
66.3
NK_84
65.8
NK_85
64.0
NK_86
62.1
NK_87
60.9
NK_88
58.4
NK_89
58.4
NK_90
55.1
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