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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • CELL LINE

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  • RGS1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:0.0 nTPM
Monaco:231.8 nTPM
Schmiedel:220.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

0.0
HPA sample nTPM
Memory B-cell
nTPM: 0.0
Samples: 6

Max nTPM: 0.1
Min nTPM: 0.0
P10809_1017 0.0
P10809_1025 0.1
P10809_1044 0.0
P10809_1063 0.0
P10809_1092 0.0
P10809_1105 0.0
Naive B-cell
nTPM: 0.0
Samples: 6

Max nTPM: 0.2
Min nTPM: 0.0
P10809_1011 0.0
P10809_1029 0.2
P10809_1048 0.0
P10809_1067 0.0
P10809_1091 0.0
P10809_1104 0.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

231.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 107.9
Samples: 4

Max nTPM: 189.7
Min nTPM: 56.3
RHH5310_R3677 56.3
RHH5218_R3590 128.1
RHH5247_R3619 189.7
RHH5276_R3648 57.3
Naive B-cell
nTPM: 129.2
Samples: 4

Max nTPM: 253.7
Min nTPM: 66.1
RHH5308_R3675 66.1
RHH5216_R3588 253.7
RHH5245_R3617 92.5
RHH5274_R3646 104.6
Non-switched memory B-cell
nTPM: 231.8
Samples: 4

Max nTPM: 370.0
Min nTPM: 102.0
RHH5309_R3676 104.3
RHH5217_R3589 350.9
RHH5246_R3618 370.0
RHH5275_R3647 102.0
Plasmablast
nTPM: 206.8
Samples: 4

Max nTPM: 303.7
Min nTPM: 58.6
RHH5312_R3679 58.6
RHH5220_R3592 303.7
RHH5249_R3621 292.1
RHH5278_R3650 172.9
Switched memory B-cell
nTPM: 88.1
Samples: 4

Max nTPM: 187.4
Min nTPM: 32.6
RHH5311_R3678 32.6
RHH5219_R3591 187.4
RHH5248_R3620 99.7
RHH5277_R3649 32.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

220.2
Schmiedel sample id TPM
Naive B-cell
TPM: 220.2
Samples: 91

Max TPM: 795.3
Min TPM: 47.5
B_CELL_NAIVE_1 795.3
B_CELL_NAIVE_2 652.2
B_CELL_NAIVE_3 600.0
B_CELL_NAIVE_4 564.5
B_CELL_NAIVE_5 437.6
B_CELL_NAIVE_6 402.8
B_CELL_NAIVE_7 396.3
B_CELL_NAIVE_8 378.7
B_CELL_NAIVE_9 369.8
B_CELL_NAIVE_10 359.5
B_CELL_NAIVE_11 356.6
B_CELL_NAIVE_12 356.3
B_CELL_NAIVE_13 347.8
B_CELL_NAIVE_14 347.0
B_CELL_NAIVE_15 345.9
B_CELL_NAIVE_16 340.5
B_CELL_NAIVE_17 312.3
B_CELL_NAIVE_18 311.9
B_CELL_NAIVE_19 310.1
B_CELL_NAIVE_20 305.1
B_CELL_NAIVE_21 299.0
B_CELL_NAIVE_22 289.1
B_CELL_NAIVE_23 284.5
B_CELL_NAIVE_24 283.8
B_CELL_NAIVE_25 274.8
B_CELL_NAIVE_26 262.4
B_CELL_NAIVE_27 259.5
B_CELL_NAIVE_28 243.1
B_CELL_NAIVE_29 241.1
B_CELL_NAIVE_30 239.7
B_CELL_NAIVE_31 239.2
B_CELL_NAIVE_32 231.2
B_CELL_NAIVE_33 222.7
B_CELL_NAIVE_34 220.8
B_CELL_NAIVE_35 220.7
B_CELL_NAIVE_36 218.4
B_CELL_NAIVE_37 216.3
B_CELL_NAIVE_38 210.1
B_CELL_NAIVE_39 209.7
B_CELL_NAIVE_40 207.6
B_CELL_NAIVE_41 206.7
B_CELL_NAIVE_42 205.1
B_CELL_NAIVE_43 203.7
B_CELL_NAIVE_44 193.0
B_CELL_NAIVE_45 190.4
B_CELL_NAIVE_46 186.7
B_CELL_NAIVE_47 184.7
B_CELL_NAIVE_48 180.7
B_CELL_NAIVE_49 179.6
B_CELL_NAIVE_50 179.5
B_CELL_NAIVE_51 173.7
B_CELL_NAIVE_52 170.2
B_CELL_NAIVE_53 167.4
B_CELL_NAIVE_54 167.2
B_CELL_NAIVE_55 162.8
B_CELL_NAIVE_56 157.4
B_CELL_NAIVE_57 156.6
B_CELL_NAIVE_58 154.2
B_CELL_NAIVE_59 154.1
B_CELL_NAIVE_60 153.7
B_CELL_NAIVE_61 151.4
B_CELL_NAIVE_62 149.8
B_CELL_NAIVE_63 147.2
B_CELL_NAIVE_64 140.9
B_CELL_NAIVE_65 139.0
B_CELL_NAIVE_66 135.2
B_CELL_NAIVE_67 132.9
B_CELL_NAIVE_68 128.4
B_CELL_NAIVE_69 125.0
B_CELL_NAIVE_70 124.1
B_CELL_NAIVE_71 121.1
B_CELL_NAIVE_72 118.8
B_CELL_NAIVE_73 117.0
B_CELL_NAIVE_74 116.5
B_CELL_NAIVE_75 116.0
B_CELL_NAIVE_76 113.2
B_CELL_NAIVE_77 111.7
B_CELL_NAIVE_78 111.6
B_CELL_NAIVE_79 109.3
B_CELL_NAIVE_80 96.6
B_CELL_NAIVE_81 96.1
B_CELL_NAIVE_82 93.9
B_CELL_NAIVE_83 87.6
B_CELL_NAIVE_84 83.2
B_CELL_NAIVE_85 78.8
B_CELL_NAIVE_86 75.9
B_CELL_NAIVE_87 74.5
B_CELL_NAIVE_88 73.7
B_CELL_NAIVE_89 64.7
B_CELL_NAIVE_90 62.5
B_CELL_NAIVE_91 47.5
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