A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.0
nTPM
Monaco:
231.8
nTPM
Schmiedel:
220.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
HPA sample
nTPM
Memory B-cell nTPM: 0.0
Samples: 6
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1017
0.0
P10809_1025
0.1
P10809_1044
0.0
P10809_1063
0.0
P10809_1092
0.0
P10809_1105
0.0
Naive B-cell nTPM: 0.0
Samples: 6
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1011
0.0
P10809_1029
0.2
P10809_1048
0.0
P10809_1067
0.0
P10809_1091
0.0
P10809_1104
0.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
231.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 107.9
Samples: 4
Max nTPM: 189.7
Min nTPM: 56.3
RHH5310_R3677
56.3
RHH5218_R3590
128.1
RHH5247_R3619
189.7
RHH5276_R3648
57.3
Naive B-cell nTPM: 129.2
Samples: 4
Max nTPM: 253.7
Min nTPM: 66.1
RHH5308_R3675
66.1
RHH5216_R3588
253.7
RHH5245_R3617
92.5
RHH5274_R3646
104.6
Non-switched memory B-cell nTPM: 231.8
Samples: 4
Max nTPM: 370.0
Min nTPM: 102.0
RHH5309_R3676
104.3
RHH5217_R3589
350.9
RHH5246_R3618
370.0
RHH5275_R3647
102.0
Plasmablast nTPM: 206.8
Samples: 4
Max nTPM: 303.7
Min nTPM: 58.6
RHH5312_R3679
58.6
RHH5220_R3592
303.7
RHH5249_R3621
292.1
RHH5278_R3650
172.9
Switched memory B-cell nTPM: 88.1
Samples: 4
Max nTPM: 187.4
Min nTPM: 32.6
RHH5311_R3678
32.6
RHH5219_R3591
187.4
RHH5248_R3620
99.7
RHH5277_R3649
32.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
220.2
Schmiedel sample id
TPM
Naive B-cell TPM: 220.2
Samples: 91
Max TPM: 795.3
Min TPM: 47.5
B_CELL_NAIVE_1
795.3
B_CELL_NAIVE_2
652.2
B_CELL_NAIVE_3
600.0
B_CELL_NAIVE_4
564.5
B_CELL_NAIVE_5
437.6
B_CELL_NAIVE_6
402.8
B_CELL_NAIVE_7
396.3
B_CELL_NAIVE_8
378.7
B_CELL_NAIVE_9
369.8
B_CELL_NAIVE_10
359.5
B_CELL_NAIVE_11
356.6
B_CELL_NAIVE_12
356.3
B_CELL_NAIVE_13
347.8
B_CELL_NAIVE_14
347.0
B_CELL_NAIVE_15
345.9
B_CELL_NAIVE_16
340.5
B_CELL_NAIVE_17
312.3
B_CELL_NAIVE_18
311.9
B_CELL_NAIVE_19
310.1
B_CELL_NAIVE_20
305.1
B_CELL_NAIVE_21
299.0
B_CELL_NAIVE_22
289.1
B_CELL_NAIVE_23
284.5
B_CELL_NAIVE_24
283.8
B_CELL_NAIVE_25
274.8
B_CELL_NAIVE_26
262.4
B_CELL_NAIVE_27
259.5
B_CELL_NAIVE_28
243.1
B_CELL_NAIVE_29
241.1
B_CELL_NAIVE_30
239.7
B_CELL_NAIVE_31
239.2
B_CELL_NAIVE_32
231.2
B_CELL_NAIVE_33
222.7
B_CELL_NAIVE_34
220.8
B_CELL_NAIVE_35
220.7
B_CELL_NAIVE_36
218.4
B_CELL_NAIVE_37
216.3
B_CELL_NAIVE_38
210.1
B_CELL_NAIVE_39
209.7
B_CELL_NAIVE_40
207.6
B_CELL_NAIVE_41
206.7
B_CELL_NAIVE_42
205.1
B_CELL_NAIVE_43
203.7
B_CELL_NAIVE_44
193.0
B_CELL_NAIVE_45
190.4
B_CELL_NAIVE_46
186.7
B_CELL_NAIVE_47
184.7
B_CELL_NAIVE_48
180.7
B_CELL_NAIVE_49
179.6
B_CELL_NAIVE_50
179.5
B_CELL_NAIVE_51
173.7
B_CELL_NAIVE_52
170.2
B_CELL_NAIVE_53
167.4
B_CELL_NAIVE_54
167.2
B_CELL_NAIVE_55
162.8
B_CELL_NAIVE_56
157.4
B_CELL_NAIVE_57
156.6
B_CELL_NAIVE_58
154.2
B_CELL_NAIVE_59
154.1
B_CELL_NAIVE_60
153.7
B_CELL_NAIVE_61
151.4
B_CELL_NAIVE_62
149.8
B_CELL_NAIVE_63
147.2
B_CELL_NAIVE_64
140.9
B_CELL_NAIVE_65
139.0
B_CELL_NAIVE_66
135.2
B_CELL_NAIVE_67
132.9
B_CELL_NAIVE_68
128.4
B_CELL_NAIVE_69
125.0
B_CELL_NAIVE_70
124.1
B_CELL_NAIVE_71
121.1
B_CELL_NAIVE_72
118.8
B_CELL_NAIVE_73
117.0
B_CELL_NAIVE_74
116.5
B_CELL_NAIVE_75
116.0
B_CELL_NAIVE_76
113.2
B_CELL_NAIVE_77
111.7
B_CELL_NAIVE_78
111.6
B_CELL_NAIVE_79
109.3
B_CELL_NAIVE_80
96.6
B_CELL_NAIVE_81
96.1
B_CELL_NAIVE_82
93.9
B_CELL_NAIVE_83
87.6
B_CELL_NAIVE_84
83.2
B_CELL_NAIVE_85
78.8
B_CELL_NAIVE_86
75.9
B_CELL_NAIVE_87
74.5
B_CELL_NAIVE_88
73.7
B_CELL_NAIVE_89
64.7
B_CELL_NAIVE_90
62.5
B_CELL_NAIVE_91
47.5
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