A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
122.5
nTPM
Schmiedel:
153.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
NK-cell nTPM: 0.7
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.0
P10809_1013
2.1
P10809_1033
1.3
P10809_1052
0.8
P10809_1071
0.0
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.5
Monaco sample
nTPM
NK-cell nTPM: 122.5
Samples: 4
Max nTPM: 367.8
Min nTPM: 28.8
RHH5316_R3683
33.9
RHH5224_R3596
367.8
RHH5253_R3625
59.6
RHH5282_R3654
28.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
153.2
Schmiedel sample id
TPM
NK-cell TPM: 153.2
Samples: 90
Max TPM: 615.8
Min TPM: 15.7
NK_1
615.8
NK_2
497.7
NK_3
478.1
NK_4
452.8
NK_5
447.5
NK_6
433.2
NK_7
362.5
NK_8
339.1
NK_9
335.8
NK_10
296.7
NK_11
280.6
NK_12
278.4
NK_13
267.7
NK_14
260.9
NK_15
260.2
NK_16
254.8
NK_17
243.8
NK_18
223.2
NK_19
219.9
NK_20
210.8
NK_21
206.0
NK_22
197.8
NK_23
191.7
NK_24
185.6
NK_25
185.2
NK_26
184.0
NK_27
183.2
NK_28
178.2
NK_29
175.8
NK_30
174.3
NK_31
168.2
NK_32
160.1
NK_33
159.6
NK_34
154.8
NK_35
153.9
NK_36
147.7
NK_37
140.8
NK_38
138.9
NK_39
137.0
NK_40
136.3
NK_41
128.2
NK_42
125.5
NK_43
123.8
NK_44
119.9
NK_45
116.7
NK_46
113.0
NK_47
108.4
NK_48
107.7
NK_49
105.8
NK_50
105.1
NK_51
100.3
NK_52
97.6
NK_53
94.4
NK_54
94.2
NK_55
93.9
NK_56
93.2
NK_57
91.5
NK_58
87.1
NK_59
83.4
NK_60
82.7
NK_61
80.7
NK_62
75.9
NK_63
75.5
NK_64
72.1
NK_65
71.8
NK_66
69.8
NK_67
68.7
NK_68
68.0
NK_69
66.9
NK_70
61.1
NK_71
60.2
NK_72
56.7
NK_73
54.7
NK_74
54.1
NK_75
53.7
NK_76
53.7
NK_77
53.1
NK_78
51.7
NK_79
49.5
NK_80
48.9
NK_81
46.0
NK_82
42.6
NK_83
37.7
NK_84
37.6
NK_85
36.8
NK_86
36.7
NK_87
35.6
NK_88
33.7
NK_89
31.4
NK_90
15.7
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