A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.1
nTPM
Monaco:
47.2
nTPM
Schmiedel:
164.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.1
HPA sample
nTPM
Classical monocyte nTPM: 0.0
Samples: 6
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.2
P10809_1039
0.0
P10809_1058
0.0
P10809_1080
0.0
P10809_1107
0.0
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1004
0.0
P10809_1023
0.9
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.1
P10809_1108
0.0
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.2
Monaco sample
nTPM
Classical monocyte nTPM: 14.4
Samples: 4
Max nTPM: 21.7
Min nTPM: 5.1
RHH5313_R3680
5.1
RHH5221_R3593
20.4
RHH5250_R3622
21.7
RHH5279_R3651
10.5
Intermediate monocyte nTPM: 47.3
Samples: 4
Max nTPM: 90.1
Min nTPM: 19.0
RHH5314_R3681
22.2
RHH5222_R3594
90.1
RHH5251_R3623
57.7
RHH5280_R3652
19.0
Non-classical monocyte nTPM: 44.4
Samples: 4
Max nTPM: 86.6
Min nTPM: 12.3
RHH5315_R3682
12.3
RHH5223_R3595
57.0
RHH5252_R3624
86.6
RHH5281_R3653
21.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
164.9
Schmiedel sample id
TPM
Classical monocyte TPM: 164.9
Samples: 91
Max TPM: 720.3
Min TPM: 18.7
MONOCYTES_1
720.3
MONOCYTES_2
605.9
MONOCYTES_3
485.8
MONOCYTES_4
456.4
MONOCYTES_5
451.9
MONOCYTES_6
436.5
MONOCYTES_7
429.0
MONOCYTES_8
410.1
MONOCYTES_9
403.9
MONOCYTES_10
398.9
MONOCYTES_11
373.7
MONOCYTES_12
368.4
MONOCYTES_13
339.7
MONOCYTES_14
335.9
MONOCYTES_15
334.8
MONOCYTES_16
271.6
MONOCYTES_17
251.2
MONOCYTES_18
238.8
MONOCYTES_19
229.4
MONOCYTES_20
217.5
MONOCYTES_21
217.3
MONOCYTES_22
208.5
MONOCYTES_23
190.8
MONOCYTES_24
184.3
MONOCYTES_25
182.9
MONOCYTES_26
182.8
MONOCYTES_27
182.8
MONOCYTES_28
181.3
MONOCYTES_29
171.5
MONOCYTES_30
164.4
MONOCYTES_31
161.9
MONOCYTES_32
160.4
MONOCYTES_33
152.9
MONOCYTES_34
145.9
MONOCYTES_35
144.8
MONOCYTES_36
144.0
MONOCYTES_37
143.2
MONOCYTES_38
136.2
MONOCYTES_39
134.7
MONOCYTES_40
132.7
MONOCYTES_41
129.6
MONOCYTES_42
128.8
MONOCYTES_43
127.3
MONOCYTES_44
117.9
MONOCYTES_45
116.2
MONOCYTES_46
116.0
MONOCYTES_47
115.3
MONOCYTES_48
113.7
MONOCYTES_49
113.4
MONOCYTES_50
113.0
MONOCYTES_51
110.9
MONOCYTES_52
110.7
MONOCYTES_53
107.6
MONOCYTES_54
105.0
MONOCYTES_55
104.8
MONOCYTES_56
102.6
MONOCYTES_57
96.4
MONOCYTES_58
92.3
MONOCYTES_59
90.5
MONOCYTES_60
90.3
MONOCYTES_61
86.7
MONOCYTES_62
86.6
MONOCYTES_63
82.5
MONOCYTES_64
78.0
MONOCYTES_65
74.1
MONOCYTES_66
73.4
MONOCYTES_67
73.1
MONOCYTES_68
70.0
MONOCYTES_69
68.3
MONOCYTES_70
63.3
MONOCYTES_71
62.7
MONOCYTES_72
62.5
MONOCYTES_73
61.3
MONOCYTES_74
60.9
MONOCYTES_75
55.7
MONOCYTES_76
54.5
MONOCYTES_77
53.4
MONOCYTES_78
52.6
MONOCYTES_79
52.1
MONOCYTES_80
51.8
MONOCYTES_81
48.6
MONOCYTES_82
48.4
MONOCYTES_83
47.3
MONOCYTES_84
43.9
MONOCYTES_85
37.3
MONOCYTES_86
34.9
MONOCYTES_87
33.2
MONOCYTES_88
32.8
MONOCYTES_89
27.8
MONOCYTES_90
22.9
MONOCYTES_91
18.7
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Non-classical monocyte TPM: 45.1
Samples: 90
Max TPM: 275.8
Min TPM: 3.5
M2_1
275.8
M2_2
171.9
M2_3
158.6
M2_4
157.7
M2_5
127.7
M2_6
90.6
M2_7
89.6
M2_8
89.2
M2_9
87.1
M2_10
86.9
M2_11
84.7
M2_12
84.4
M2_13
76.1
M2_14
76.0
M2_15
75.1
M2_16
74.9
M2_17
73.4
M2_18
71.4
M2_19
69.6
M2_20
67.4
M2_21
63.8
M2_22
61.0
M2_23
60.5
M2_24
60.1
M2_25
57.8
M2_26
55.9
M2_27
54.2
M2_28
52.9
M2_29
52.9
M2_30
50.4
M2_31
50.2
M2_32
48.1
M2_33
46.9
M2_34
43.8
M2_35
43.0
M2_36
42.9
M2_37
40.5
M2_38
39.6
M2_39
37.6
M2_40
36.7
M2_41
35.3
M2_42
34.6
M2_43
33.6
M2_44
31.5
M2_45
30.1
M2_46
29.7
M2_47
29.2
M2_48
28.5
M2_49
28.2
M2_50
26.7
M2_51
26.4
M2_52
25.6
M2_53
25.6
M2_54
25.0
M2_55
24.7
M2_56
24.6
M2_57
23.6
M2_58
23.4
M2_59
23.2
M2_60
23.0
M2_61
23.0
M2_62
22.3
M2_63
21.8
M2_64
19.5
M2_65
19.2
M2_66
18.9
M2_67
18.5
M2_68
17.6
M2_69
16.4
M2_70
16.2
M2_71
15.8
M2_72
15.4
M2_73
15.3
M2_74
15.3
M2_75
14.8
M2_76
12.5
M2_77
12.3
M2_78
12.3
M2_79
12.0
M2_80
11.8
M2_81
11.8
M2_82
11.4
M2_83
11.2
M2_84
10.5
M2_85
9.6
M2_86
9.1
M2_87
8.7
M2_88
6.0
M2_89
5.0
M2_90
3.5
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