A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.0
nTPM
Monaco:
115.8
nTPM
Schmiedel:
109.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.0
HPA sample
nTPM
Memory B-cell nTPM: 16.1
Samples: 6
Max nTPM: 19.7
Min nTPM: 10.5
P10809_1017
16.1
P10809_1025
17.8
P10809_1044
10.5
P10809_1063
17.5
P10809_1092
14.8
P10809_1105
19.7
Naive B-cell nTPM: 20.0
Samples: 6
Max nTPM: 51.2
Min nTPM: 11.8
P10809_1011
16.1
P10809_1029
12.5
P10809_1048
51.2
P10809_1067
14.9
P10809_1091
11.8
P10809_1104
13.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 31.3
Samples: 4
Max nTPM: 50.9
Min nTPM: 17.3
RHH5310_R3677
50.9
RHH5218_R3590
18.0
RHH5247_R3619
17.3
RHH5276_R3648
39.0
Naive B-cell nTPM: 14.3
Samples: 4
Max nTPM: 19.0
Min nTPM: 11.3
RHH5308_R3675
19.0
RHH5216_R3588
12.8
RHH5245_R3617
11.3
RHH5274_R3646
14.1
Non-switched memory B-cell nTPM: 22.8
Samples: 4
Max nTPM: 30.6
Min nTPM: 17.7
RHH5309_R3676
30.6
RHH5217_R3589
22.7
RHH5246_R3618
17.7
RHH5275_R3647
20.0
Plasmablast nTPM: 115.8
Samples: 4
Max nTPM: 171.4
Min nTPM: 54.5
RHH5312_R3679
141.9
RHH5220_R3592
95.3
RHH5249_R3621
171.4
RHH5278_R3650
54.5
Switched memory B-cell nTPM: 31.6
Samples: 4
Max nTPM: 39.8
Min nTPM: 22.1
RHH5311_R3678
39.8
RHH5219_R3591
22.1
RHH5248_R3620
30.0
RHH5277_R3649
34.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.1
Schmiedel sample id
TPM
Naive B-cell TPM: 109.1
Samples: 91
Max TPM: 167.0
Min TPM: 69.2
B_CELL_NAIVE_1
167.0
B_CELL_NAIVE_2
158.5
B_CELL_NAIVE_3
151.8
B_CELL_NAIVE_4
143.8
B_CELL_NAIVE_5
139.5
B_CELL_NAIVE_6
137.1
B_CELL_NAIVE_7
135.1
B_CELL_NAIVE_8
130.1
B_CELL_NAIVE_9
126.3
B_CELL_NAIVE_10
121.0
B_CELL_NAIVE_11
120.0
B_CELL_NAIVE_12
119.9
B_CELL_NAIVE_13
118.5
B_CELL_NAIVE_14
118.4
B_CELL_NAIVE_15
117.7
B_CELL_NAIVE_16
116.6
B_CELL_NAIVE_17
116.6
B_CELL_NAIVE_18
116.5
B_CELL_NAIVE_19
116.4
B_CELL_NAIVE_20
115.8
B_CELL_NAIVE_21
115.7
B_CELL_NAIVE_22
115.6
B_CELL_NAIVE_23
115.1
B_CELL_NAIVE_24
114.7
B_CELL_NAIVE_25
114.6
B_CELL_NAIVE_26
114.3
B_CELL_NAIVE_27
114.3
B_CELL_NAIVE_28
114.1
B_CELL_NAIVE_29
114.0
B_CELL_NAIVE_30
113.7
B_CELL_NAIVE_31
113.5
B_CELL_NAIVE_32
113.3
B_CELL_NAIVE_33
112.1
B_CELL_NAIVE_34
112.0
B_CELL_NAIVE_35
110.7
B_CELL_NAIVE_36
109.9
B_CELL_NAIVE_37
109.9
B_CELL_NAIVE_38
109.1
B_CELL_NAIVE_39
109.1
B_CELL_NAIVE_40
109.0
B_CELL_NAIVE_41
109.0
B_CELL_NAIVE_42
108.9
B_CELL_NAIVE_43
108.6
B_CELL_NAIVE_44
108.5
B_CELL_NAIVE_45
108.2
B_CELL_NAIVE_46
107.3
B_CELL_NAIVE_47
106.5
B_CELL_NAIVE_48
106.2
B_CELL_NAIVE_49
106.0
B_CELL_NAIVE_50
104.8
B_CELL_NAIVE_51
104.7
B_CELL_NAIVE_52
104.5
B_CELL_NAIVE_53
104.1
B_CELL_NAIVE_54
103.8
B_CELL_NAIVE_55
103.8
B_CELL_NAIVE_56
103.7
B_CELL_NAIVE_57
103.5
B_CELL_NAIVE_58
103.4
B_CELL_NAIVE_59
102.3
B_CELL_NAIVE_60
102.2
B_CELL_NAIVE_61
102.1
B_CELL_NAIVE_62
101.9
B_CELL_NAIVE_63
101.2
B_CELL_NAIVE_64
100.9
B_CELL_NAIVE_65
100.5
B_CELL_NAIVE_66
99.8
B_CELL_NAIVE_67
99.8
B_CELL_NAIVE_68
99.3
B_CELL_NAIVE_69
99.0
B_CELL_NAIVE_70
98.7
B_CELL_NAIVE_71
98.6
B_CELL_NAIVE_72
98.3
B_CELL_NAIVE_73
98.2
B_CELL_NAIVE_74
98.2
B_CELL_NAIVE_75
98.1
B_CELL_NAIVE_76
98.1
B_CELL_NAIVE_77
97.6
B_CELL_NAIVE_78
97.5
B_CELL_NAIVE_79
97.4
B_CELL_NAIVE_80
96.7
B_CELL_NAIVE_81
96.5
B_CELL_NAIVE_82
96.3
B_CELL_NAIVE_83
95.8
B_CELL_NAIVE_84
95.5
B_CELL_NAIVE_85
93.6
B_CELL_NAIVE_86
91.6
B_CELL_NAIVE_87
91.6
B_CELL_NAIVE_88
91.0
B_CELL_NAIVE_89
90.5
B_CELL_NAIVE_90
86.5
B_CELL_NAIVE_91
69.2
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