A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.9
nTPM
Monaco:
10.6
nTPM
Schmiedel:
82.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.9
HPA sample
nTPM
NK-cell nTPM: 11.9
Samples: 6
Max nTPM: 25.7
Min nTPM: 5.1
P10809_1013
8.4
P10809_1033
6.2
P10809_1052
5.1
P10809_1071
12.4
P10809_1093
25.7
P10809_1103
13.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.6
Monaco sample
nTPM
NK-cell nTPM: 10.6
Samples: 4
Max nTPM: 17.0
Min nTPM: 5.9
RHH5316_R3683
5.9
RHH5224_R3596
12.4
RHH5253_R3625
17.0
RHH5282_R3654
7.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.8
Schmiedel sample id
TPM
NK-cell TPM: 82.8
Samples: 90
Max TPM: 126.8
Min TPM: 52.1
NK_1
126.8
NK_2
125.8
NK_3
124.7
NK_4
122.1
NK_5
120.8
NK_6
114.5
NK_7
113.8
NK_8
110.2
NK_9
109.6
NK_10
108.4
NK_11
107.3
NK_12
106.5
NK_13
103.6
NK_14
102.8
NK_15
102.6
NK_16
101.1
NK_17
100.8
NK_18
99.3
NK_19
98.1
NK_20
97.7
NK_21
97.4
NK_22
96.0
NK_23
95.6
NK_24
95.1
NK_25
94.2
NK_26
92.8
NK_27
92.5
NK_28
91.0
NK_29
89.5
NK_30
88.3
NK_31
87.9
NK_32
87.3
NK_33
86.2
NK_34
86.2
NK_35
84.5
NK_36
84.4
NK_37
84.4
NK_38
82.0
NK_39
80.8
NK_40
80.6
NK_41
79.9
NK_42
79.6
NK_43
79.1
NK_44
79.0
NK_45
78.9
NK_46
78.6
NK_47
78.6
NK_48
78.0
NK_49
76.5
NK_50
76.2
NK_51
76.0
NK_52
75.7
NK_53
75.6
NK_54
75.4
NK_55
75.2
NK_56
74.8
NK_57
74.6
NK_58
73.8
NK_59
73.5
NK_60
73.5
NK_61
72.7
NK_62
72.4
NK_63
71.9
NK_64
70.4
NK_65
70.0
NK_66
69.9
NK_67
69.4
NK_68
69.2
NK_69
68.4
NK_70
67.7
NK_71
67.6
NK_72
66.8
NK_73
66.6
NK_74
66.3
NK_75
65.5
NK_76
65.4
NK_77
65.3
NK_78
63.8
NK_79
63.2
NK_80
62.9
NK_81
62.8
NK_82
62.5
NK_83
61.9
NK_84
61.9
NK_85
61.7
NK_86
60.4
NK_87
59.7
NK_88
58.3
NK_89
53.8
NK_90
52.1
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