A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.1
nTPM
Monaco:
47.7
nTPM
Schmiedel:
271.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.1
HPA sample
nTPM
Classical monocyte nTPM: 18.2
Samples: 6
Max nTPM: 25.9
Min nTPM: 10.8
P10809_1003
10.8
P10809_1020
15.2
P10809_1039
17.0
P10809_1058
21.4
P10809_1080
19.0
P10809_1107
25.9
Intermediate monocyte nTPM: 23.0
Samples: 6
Max nTPM: 34.0
Min nTPM: 14.1
P10809_1004
15.9
P10809_1023
29.4
P10809_1042
20.0
P10809_1061
14.1
P10809_1081
24.5
P10809_1108
34.0
Non-classical monocyte nTPM: 33.2
Samples: 5
Max nTPM: 56.9
Min nTPM: 22.1
P10809_1005
22.1
P10809_1053
32.4
P10809_1072
56.9
P10809_1082
24.8
P10809_1109
29.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.7
Monaco sample
nTPM
Classical monocyte nTPM: 24.9
Samples: 4
Max nTPM: 28.2
Min nTPM: 20.0
RHH5313_R3680
23.2
RHH5221_R3593
20.0
RHH5250_R3622
28.2
RHH5279_R3651
28.2
Intermediate monocyte nTPM: 47.7
Samples: 4
Max nTPM: 72.5
Min nTPM: 24.4
RHH5314_R3681
24.4
RHH5222_R3594
34.0
RHH5251_R3623
59.8
RHH5280_R3652
72.5
Non-classical monocyte nTPM: 42.0
Samples: 4
Max nTPM: 58.2
Min nTPM: 20.6
RHH5315_R3682
58.2
RHH5223_R3595
20.6
RHH5252_R3624
41.5
RHH5281_R3653
47.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
271.1
Schmiedel sample id
TPM
Classical monocyte TPM: 122.9
Samples: 91
Max TPM: 161.7
Min TPM: 85.6
MONOCYTES_1
161.7
MONOCYTES_2
156.3
MONOCYTES_3
155.0
MONOCYTES_4
150.3
MONOCYTES_5
149.7
MONOCYTES_6
144.0
MONOCYTES_7
143.9
MONOCYTES_8
142.5
MONOCYTES_9
141.5
MONOCYTES_10
140.3
MONOCYTES_11
140.3
MONOCYTES_12
140.0
MONOCYTES_13
139.5
MONOCYTES_14
139.1
MONOCYTES_15
139.0
MONOCYTES_16
138.6
MONOCYTES_17
137.9
MONOCYTES_18
137.8
MONOCYTES_19
137.2
MONOCYTES_20
136.5
MONOCYTES_21
135.9
MONOCYTES_22
135.6
MONOCYTES_23
135.5
MONOCYTES_24
135.2
MONOCYTES_25
134.3
MONOCYTES_26
132.9
MONOCYTES_27
132.7
MONOCYTES_28
132.1
MONOCYTES_29
132.0
MONOCYTES_30
130.9
MONOCYTES_31
130.4
MONOCYTES_32
130.4
MONOCYTES_33
129.5
MONOCYTES_34
128.4
MONOCYTES_35
128.2
MONOCYTES_36
127.8
MONOCYTES_37
127.7
MONOCYTES_38
127.3
MONOCYTES_39
127.3
MONOCYTES_40
126.7
MONOCYTES_41
126.6
MONOCYTES_42
125.8
MONOCYTES_43
125.7
MONOCYTES_44
125.1
MONOCYTES_45
124.9
MONOCYTES_46
124.6
MONOCYTES_47
123.6
MONOCYTES_48
123.2
MONOCYTES_49
122.2
MONOCYTES_50
121.7
MONOCYTES_51
120.2
MONOCYTES_52
118.7
MONOCYTES_53
117.9
MONOCYTES_54
117.2
MONOCYTES_55
116.2
MONOCYTES_56
115.3
MONOCYTES_57
115.0
MONOCYTES_58
114.2
MONOCYTES_59
113.5
MONOCYTES_60
113.4
MONOCYTES_61
113.1
MONOCYTES_62
112.4
MONOCYTES_63
112.2
MONOCYTES_64
111.9
MONOCYTES_65
111.8
MONOCYTES_66
111.6
MONOCYTES_67
111.3
MONOCYTES_68
111.1
MONOCYTES_69
110.5
MONOCYTES_70
110.3
MONOCYTES_71
109.9
MONOCYTES_72
109.9
MONOCYTES_73
109.7
MONOCYTES_74
109.2
MONOCYTES_75
109.2
MONOCYTES_76
107.6
MONOCYTES_77
106.3
MONOCYTES_78
106.2
MONOCYTES_79
106.1
MONOCYTES_80
105.7
MONOCYTES_81
104.3
MONOCYTES_82
103.4
MONOCYTES_83
102.9
MONOCYTES_84
102.5
MONOCYTES_85
102.4
MONOCYTES_86
101.3
MONOCYTES_87
99.8
MONOCYTES_88
99.5
MONOCYTES_89
96.0
MONOCYTES_90
88.9
MONOCYTES_91
85.6
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Non-classical monocyte TPM: 271.1
Samples: 90
Max TPM: 591.7
Min TPM: 181.1
M2_1
591.7
M2_2
424.8
M2_3
392.4
M2_4
389.3
M2_5
384.0
M2_6
383.5
M2_7
377.9
M2_8
377.8
M2_9
361.8
M2_10
353.7
M2_11
346.8
M2_12
343.3
M2_13
338.0
M2_14
333.3
M2_15
329.1
M2_16
328.7
M2_17
320.6
M2_18
315.9
M2_19
314.2
M2_20
308.8
M2_21
304.6
M2_22
303.7
M2_23
301.3
M2_24
299.4
M2_25
298.5
M2_26
293.7
M2_27
292.6
M2_28
290.2
M2_29
284.2
M2_30
283.1
M2_31
282.3
M2_32
279.4
M2_33
279.2
M2_34
279.0
M2_35
277.1
M2_36
274.5
M2_37
273.5
M2_38
265.0
M2_39
260.7
M2_40
260.5
M2_41
258.5
M2_42
256.3
M2_43
253.5
M2_44
253.3
M2_45
252.5
M2_46
251.8
M2_47
251.0
M2_48
250.1
M2_49
249.4
M2_50
246.0
M2_51
244.6
M2_52
244.6
M2_53
244.3
M2_54
243.8
M2_55
243.3
M2_56
242.7
M2_57
240.4
M2_58
238.3
M2_59
237.5
M2_60
237.4
M2_61
236.7
M2_62
236.1
M2_63
236.1
M2_64
234.0
M2_65
233.9
M2_66
233.9
M2_67
231.7
M2_68
229.8
M2_69
226.7
M2_70
225.5
M2_71
225.2
M2_72
224.8
M2_73
221.3
M2_74
218.1
M2_75
216.2
M2_76
215.2
M2_77
212.2
M2_78
211.5
M2_79
211.2
M2_80
210.7
M2_81
208.9
M2_82
207.9
M2_83
206.2
M2_84
204.7
M2_85
198.0
M2_86
197.4
M2_87
191.3
M2_88
188.7
M2_89
188.2
M2_90
181.1
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