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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • USP48
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:30.0 nTPM
Monaco:233.3 nTPM
Schmiedel:76.5 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

30.0
HPA sample nTPM
Memory B-cell
nTPM: 28.7
Samples: 6

Max nTPM: 56.6
Min nTPM: 14.4
P10809_1017 22.6
P10809_1025 28.0
P10809_1044 56.6
P10809_1063 21.0
P10809_1092 29.8
P10809_1105 14.4
Naive B-cell
nTPM: 30.1
Samples: 6

Max nTPM: 94.1
Min nTPM: 4.1
P10809_1011 20.6
P10809_1029 21.9
P10809_1048 94.1
P10809_1067 4.1
P10809_1091 28.3
P10809_1104 11.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

233.3
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 90.6
Samples: 4

Max nTPM: 139.8
Min nTPM: 68.9
RHH5310_R3677 68.9
RHH5218_R3590 74.9
RHH5247_R3619 78.9
RHH5276_R3648 139.8
Naive B-cell
nTPM: 61.5
Samples: 4

Max nTPM: 92.4
Min nTPM: 31.9
RHH5308_R3675 70.4
RHH5216_R3588 31.9
RHH5245_R3617 51.4
RHH5274_R3646 92.4
Non-switched memory B-cell
nTPM: 94.3
Samples: 4

Max nTPM: 133.9
Min nTPM: 41.0
RHH5309_R3676 84.1
RHH5217_R3589 41.0
RHH5246_R3618 118.1
RHH5275_R3647 133.9
Plasmablast
nTPM: 233.3
Samples: 4

Max nTPM: 291.6
Min nTPM: 131.1
RHH5312_R3679 131.1
RHH5220_R3592 259.6
RHH5249_R3621 250.8
RHH5278_R3650 291.6
Switched memory B-cell
nTPM: 86.7
Samples: 4

Max nTPM: 148.1
Min nTPM: 35.8
RHH5311_R3678 35.8
RHH5219_R3591 107.9
RHH5248_R3620 54.9
RHH5277_R3649 148.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

76.5
Schmiedel sample id TPM
Naive B-cell
TPM: 76.5
Samples: 91

Max TPM: 111.4
Min TPM: 53.4
B_CELL_NAIVE_1 111.4
B_CELL_NAIVE_2 108.8
B_CELL_NAIVE_3 104.7
B_CELL_NAIVE_4 100.4
B_CELL_NAIVE_5 100.2
B_CELL_NAIVE_6 94.1
B_CELL_NAIVE_7 94.0
B_CELL_NAIVE_8 92.4
B_CELL_NAIVE_9 91.6
B_CELL_NAIVE_10 90.6
B_CELL_NAIVE_11 88.2
B_CELL_NAIVE_12 88.2
B_CELL_NAIVE_13 87.8
B_CELL_NAIVE_14 87.8
B_CELL_NAIVE_15 87.5
B_CELL_NAIVE_16 87.4
B_CELL_NAIVE_17 85.1
B_CELL_NAIVE_18 84.4
B_CELL_NAIVE_19 84.3
B_CELL_NAIVE_20 84.1
B_CELL_NAIVE_21 83.9
B_CELL_NAIVE_22 83.7
B_CELL_NAIVE_23 83.5
B_CELL_NAIVE_24 83.5
B_CELL_NAIVE_25 83.3
B_CELL_NAIVE_26 83.0
B_CELL_NAIVE_27 83.0
B_CELL_NAIVE_28 82.9
B_CELL_NAIVE_29 82.4
B_CELL_NAIVE_30 80.8
B_CELL_NAIVE_31 80.0
B_CELL_NAIVE_32 80.0
B_CELL_NAIVE_33 79.6
B_CELL_NAIVE_34 79.5
B_CELL_NAIVE_35 79.4
B_CELL_NAIVE_36 78.9
B_CELL_NAIVE_37 78.5
B_CELL_NAIVE_38 78.5
B_CELL_NAIVE_39 78.3
B_CELL_NAIVE_40 78.0
B_CELL_NAIVE_41 77.9
B_CELL_NAIVE_42 77.5
B_CELL_NAIVE_43 76.7
B_CELL_NAIVE_44 76.6
B_CELL_NAIVE_45 76.4
B_CELL_NAIVE_46 75.9
B_CELL_NAIVE_47 75.7
B_CELL_NAIVE_48 75.3
B_CELL_NAIVE_49 75.1
B_CELL_NAIVE_50 74.8
B_CELL_NAIVE_51 74.8
B_CELL_NAIVE_52 74.4
B_CELL_NAIVE_53 74.1
B_CELL_NAIVE_54 73.5
B_CELL_NAIVE_55 73.4
B_CELL_NAIVE_56 73.2
B_CELL_NAIVE_57 73.0
B_CELL_NAIVE_58 72.2
B_CELL_NAIVE_59 71.9
B_CELL_NAIVE_60 71.3
B_CELL_NAIVE_61 69.9
B_CELL_NAIVE_62 69.7
B_CELL_NAIVE_63 69.6
B_CELL_NAIVE_64 68.6
B_CELL_NAIVE_65 68.5
B_CELL_NAIVE_66 68.5
B_CELL_NAIVE_67 67.6
B_CELL_NAIVE_68 67.4
B_CELL_NAIVE_69 67.4
B_CELL_NAIVE_70 67.3
B_CELL_NAIVE_71 67.2
B_CELL_NAIVE_72 66.6
B_CELL_NAIVE_73 66.2
B_CELL_NAIVE_74 65.4
B_CELL_NAIVE_75 65.4
B_CELL_NAIVE_76 65.4
B_CELL_NAIVE_77 65.4
B_CELL_NAIVE_78 65.3
B_CELL_NAIVE_79 64.9
B_CELL_NAIVE_80 64.4
B_CELL_NAIVE_81 63.8
B_CELL_NAIVE_82 63.3
B_CELL_NAIVE_83 62.8
B_CELL_NAIVE_84 62.7
B_CELL_NAIVE_85 60.8
B_CELL_NAIVE_86 59.8
B_CELL_NAIVE_87 58.9
B_CELL_NAIVE_88 58.5
B_CELL_NAIVE_89 56.1
B_CELL_NAIVE_90 54.5
B_CELL_NAIVE_91 53.4
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