A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.0
nTPM
Monaco:
233.3
nTPM
Schmiedel:
76.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.0
HPA sample
nTPM
Memory B-cell nTPM: 28.7
Samples: 6
Max nTPM: 56.6
Min nTPM: 14.4
P10809_1017
22.6
P10809_1025
28.0
P10809_1044
56.6
P10809_1063
21.0
P10809_1092
29.8
P10809_1105
14.4
Naive B-cell nTPM: 30.1
Samples: 6
Max nTPM: 94.1
Min nTPM: 4.1
P10809_1011
20.6
P10809_1029
21.9
P10809_1048
94.1
P10809_1067
4.1
P10809_1091
28.3
P10809_1104
11.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
233.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 90.6
Samples: 4
Max nTPM: 139.8
Min nTPM: 68.9
RHH5310_R3677
68.9
RHH5218_R3590
74.9
RHH5247_R3619
78.9
RHH5276_R3648
139.8
Naive B-cell nTPM: 61.5
Samples: 4
Max nTPM: 92.4
Min nTPM: 31.9
RHH5308_R3675
70.4
RHH5216_R3588
31.9
RHH5245_R3617
51.4
RHH5274_R3646
92.4
Non-switched memory B-cell nTPM: 94.3
Samples: 4
Max nTPM: 133.9
Min nTPM: 41.0
RHH5309_R3676
84.1
RHH5217_R3589
41.0
RHH5246_R3618
118.1
RHH5275_R3647
133.9
Plasmablast nTPM: 233.3
Samples: 4
Max nTPM: 291.6
Min nTPM: 131.1
RHH5312_R3679
131.1
RHH5220_R3592
259.6
RHH5249_R3621
250.8
RHH5278_R3650
291.6
Switched memory B-cell nTPM: 86.7
Samples: 4
Max nTPM: 148.1
Min nTPM: 35.8
RHH5311_R3678
35.8
RHH5219_R3591
107.9
RHH5248_R3620
54.9
RHH5277_R3649
148.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.5
Schmiedel sample id
TPM
Naive B-cell TPM: 76.5
Samples: 91
Max TPM: 111.4
Min TPM: 53.4
B_CELL_NAIVE_1
111.4
B_CELL_NAIVE_2
108.8
B_CELL_NAIVE_3
104.7
B_CELL_NAIVE_4
100.4
B_CELL_NAIVE_5
100.2
B_CELL_NAIVE_6
94.1
B_CELL_NAIVE_7
94.0
B_CELL_NAIVE_8
92.4
B_CELL_NAIVE_9
91.6
B_CELL_NAIVE_10
90.6
B_CELL_NAIVE_11
88.2
B_CELL_NAIVE_12
88.2
B_CELL_NAIVE_13
87.8
B_CELL_NAIVE_14
87.8
B_CELL_NAIVE_15
87.5
B_CELL_NAIVE_16
87.4
B_CELL_NAIVE_17
85.1
B_CELL_NAIVE_18
84.4
B_CELL_NAIVE_19
84.3
B_CELL_NAIVE_20
84.1
B_CELL_NAIVE_21
83.9
B_CELL_NAIVE_22
83.7
B_CELL_NAIVE_23
83.5
B_CELL_NAIVE_24
83.5
B_CELL_NAIVE_25
83.3
B_CELL_NAIVE_26
83.0
B_CELL_NAIVE_27
83.0
B_CELL_NAIVE_28
82.9
B_CELL_NAIVE_29
82.4
B_CELL_NAIVE_30
80.8
B_CELL_NAIVE_31
80.0
B_CELL_NAIVE_32
80.0
B_CELL_NAIVE_33
79.6
B_CELL_NAIVE_34
79.5
B_CELL_NAIVE_35
79.4
B_CELL_NAIVE_36
78.9
B_CELL_NAIVE_37
78.5
B_CELL_NAIVE_38
78.5
B_CELL_NAIVE_39
78.3
B_CELL_NAIVE_40
78.0
B_CELL_NAIVE_41
77.9
B_CELL_NAIVE_42
77.5
B_CELL_NAIVE_43
76.7
B_CELL_NAIVE_44
76.6
B_CELL_NAIVE_45
76.4
B_CELL_NAIVE_46
75.9
B_CELL_NAIVE_47
75.7
B_CELL_NAIVE_48
75.3
B_CELL_NAIVE_49
75.1
B_CELL_NAIVE_50
74.8
B_CELL_NAIVE_51
74.8
B_CELL_NAIVE_52
74.4
B_CELL_NAIVE_53
74.1
B_CELL_NAIVE_54
73.5
B_CELL_NAIVE_55
73.4
B_CELL_NAIVE_56
73.2
B_CELL_NAIVE_57
73.0
B_CELL_NAIVE_58
72.2
B_CELL_NAIVE_59
71.9
B_CELL_NAIVE_60
71.3
B_CELL_NAIVE_61
69.9
B_CELL_NAIVE_62
69.7
B_CELL_NAIVE_63
69.6
B_CELL_NAIVE_64
68.6
B_CELL_NAIVE_65
68.5
B_CELL_NAIVE_66
68.5
B_CELL_NAIVE_67
67.6
B_CELL_NAIVE_68
67.4
B_CELL_NAIVE_69
67.4
B_CELL_NAIVE_70
67.3
B_CELL_NAIVE_71
67.2
B_CELL_NAIVE_72
66.6
B_CELL_NAIVE_73
66.2
B_CELL_NAIVE_74
65.4
B_CELL_NAIVE_75
65.4
B_CELL_NAIVE_76
65.4
B_CELL_NAIVE_77
65.4
B_CELL_NAIVE_78
65.3
B_CELL_NAIVE_79
64.9
B_CELL_NAIVE_80
64.4
B_CELL_NAIVE_81
63.8
B_CELL_NAIVE_82
63.3
B_CELL_NAIVE_83
62.8
B_CELL_NAIVE_84
62.7
B_CELL_NAIVE_85
60.8
B_CELL_NAIVE_86
59.8
B_CELL_NAIVE_87
58.9
B_CELL_NAIVE_88
58.5
B_CELL_NAIVE_89
56.1
B_CELL_NAIVE_90
54.5
B_CELL_NAIVE_91
53.4
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