A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.6
nTPM
Monaco:
87.7
nTPM
Schmiedel:
58.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.6
HPA sample
nTPM
Classical monocyte nTPM: 19.6
Samples: 6
Max nTPM: 42.7
Min nTPM: 9.1
P10809_1003
15.4
P10809_1020
16.6
P10809_1039
42.7
P10809_1058
12.9
P10809_1080
9.1
P10809_1107
21.0
Intermediate monocyte nTPM: 9.4
Samples: 6
Max nTPM: 15.9
Min nTPM: 3.8
P10809_1004
15.9
P10809_1023
8.4
P10809_1042
5.6
P10809_1061
8.0
P10809_1081
3.8
P10809_1108
14.7
Non-classical monocyte nTPM: 10.9
Samples: 5
Max nTPM: 16.1
Min nTPM: 3.3
P10809_1005
12.9
P10809_1053
3.3
P10809_1072
13.1
P10809_1082
9.3
P10809_1109
16.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.7
Monaco sample
nTPM
Classical monocyte nTPM: 87.7
Samples: 4
Max nTPM: 99.8
Min nTPM: 74.4
RHH5313_R3680
74.4
RHH5221_R3593
80.1
RHH5250_R3622
99.8
RHH5279_R3651
96.3
Intermediate monocyte nTPM: 56.1
Samples: 4
Max nTPM: 72.3
Min nTPM: 32.6
RHH5314_R3681
63.7
RHH5222_R3594
72.3
RHH5251_R3623
55.8
RHH5280_R3652
32.6
Non-classical monocyte nTPM: 60.8
Samples: 4
Max nTPM: 75.8
Min nTPM: 37.3
RHH5315_R3682
57.1
RHH5223_R3595
73.0
RHH5252_R3624
75.8
RHH5281_R3653
37.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.6
Schmiedel sample id
TPM
Classical monocyte TPM: 58.6
Samples: 91
Max TPM: 74.9
Min TPM: 45.4
MONOCYTES_1
74.9
MONOCYTES_2
74.8
MONOCYTES_3
73.5
MONOCYTES_4
73.3
MONOCYTES_5
72.0
MONOCYTES_6
71.9
MONOCYTES_7
70.7
MONOCYTES_8
70.6
MONOCYTES_9
69.7
MONOCYTES_10
69.2
MONOCYTES_11
69.1
MONOCYTES_12
67.9
MONOCYTES_13
67.8
MONOCYTES_14
67.7
MONOCYTES_15
67.6
MONOCYTES_16
67.6
MONOCYTES_17
66.6
MONOCYTES_18
65.5
MONOCYTES_19
65.2
MONOCYTES_20
65.2
MONOCYTES_21
64.8
MONOCYTES_22
64.7
MONOCYTES_23
64.4
MONOCYTES_24
64.3
MONOCYTES_25
64.3
MONOCYTES_26
63.7
MONOCYTES_27
63.4
MONOCYTES_28
62.7
MONOCYTES_29
62.1
MONOCYTES_30
61.9
MONOCYTES_31
60.9
MONOCYTES_32
60.5
MONOCYTES_33
60.3
MONOCYTES_34
60.2
MONOCYTES_35
60.1
MONOCYTES_36
59.8
MONOCYTES_37
59.7
MONOCYTES_38
59.7
MONOCYTES_39
59.4
MONOCYTES_40
59.3
MONOCYTES_41
59.3
MONOCYTES_42
59.2
MONOCYTES_43
58.8
MONOCYTES_44
57.6
MONOCYTES_45
57.5
MONOCYTES_46
57.1
MONOCYTES_47
56.7
MONOCYTES_48
56.6
MONOCYTES_49
56.3
MONOCYTES_50
55.7
MONOCYTES_51
54.9
MONOCYTES_52
54.9
MONOCYTES_53
54.6
MONOCYTES_54
54.6
MONOCYTES_55
54.5
MONOCYTES_56
54.5
MONOCYTES_57
54.3
MONOCYTES_58
54.3
MONOCYTES_59
54.0
MONOCYTES_60
53.9
MONOCYTES_61
53.8
MONOCYTES_62
53.4
MONOCYTES_63
53.2
MONOCYTES_64
53.2
MONOCYTES_65
53.2
MONOCYTES_66
53.2
MONOCYTES_67
52.8
MONOCYTES_68
52.8
MONOCYTES_69
52.7
MONOCYTES_70
52.6
MONOCYTES_71
52.6
MONOCYTES_72
52.4
MONOCYTES_73
52.0
MONOCYTES_74
51.7
MONOCYTES_75
51.6
MONOCYTES_76
51.6
MONOCYTES_77
51.4
MONOCYTES_78
51.3
MONOCYTES_79
51.1
MONOCYTES_80
51.0
MONOCYTES_81
50.9
MONOCYTES_82
50.9
MONOCYTES_83
50.2
MONOCYTES_84
49.7
MONOCYTES_85
49.5
MONOCYTES_86
48.9
MONOCYTES_87
48.8
MONOCYTES_88
48.7
MONOCYTES_89
48.3
MONOCYTES_90
46.9
MONOCYTES_91
45.4
Show allShow less
Non-classical monocyte TPM: 47.4
Samples: 90
Max TPM: 67.0
Min TPM: 34.7
M2_1
67.0
M2_2
65.4
M2_3
62.8
M2_4
62.2
M2_5
60.7
M2_6
60.4
M2_7
59.7
M2_8
59.7
M2_9
59.5
M2_10
58.3
M2_11
57.4
M2_12
56.5
M2_13
56.1
M2_14
55.4
M2_15
54.4
M2_16
54.2
M2_17
53.9
M2_18
53.0
M2_19
53.0
M2_20
52.8
M2_21
52.7
M2_22
52.1
M2_23
51.9
M2_24
51.8
M2_25
51.5
M2_26
50.8
M2_27
50.7
M2_28
50.5
M2_29
49.9
M2_30
49.6
M2_31
49.6
M2_32
48.9
M2_33
48.9
M2_34
48.4
M2_35
48.3
M2_36
48.3
M2_37
48.3
M2_38
48.2
M2_39
47.9
M2_40
47.9
M2_41
47.9
M2_42
47.8
M2_43
47.7
M2_44
46.8
M2_45
46.8
M2_46
46.2
M2_47
46.2
M2_48
45.9
M2_49
45.5
M2_50
45.4
M2_51
45.4
M2_52
45.3
M2_53
45.3
M2_54
45.0
M2_55
44.7
M2_56
44.6
M2_57
44.4
M2_58
44.1
M2_59
44.1
M2_60
43.8
M2_61
43.5
M2_62
43.3
M2_63
43.1
M2_64
42.9
M2_65
42.7
M2_66
42.7
M2_67
42.6
M2_68
42.5
M2_69
42.0
M2_70
41.7
M2_71
40.8
M2_72
40.7
M2_73
40.7
M2_74
40.4
M2_75
40.3
M2_76
40.2
M2_77
39.7
M2_78
39.5
M2_79
39.0
M2_80
38.8
M2_81
38.7
M2_82
38.6
M2_83
38.6
M2_84
38.6
M2_85
38.3
M2_86
37.2
M2_87
36.0
M2_88
35.5
M2_89
34.9
M2_90
34.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
