A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.2
nTPM
Monaco:
72.0
nTPM
Schmiedel:
65.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.2
HPA sample
nTPM
NK-cell nTPM: 12.2
Samples: 6
Max nTPM: 18.1
Min nTPM: 0.1
P10809_1013
11.8
P10809_1033
18.1
P10809_1052
14.3
P10809_1071
14.9
P10809_1093
0.1
P10809_1103
14.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.0
Monaco sample
nTPM
NK-cell nTPM: 72.0
Samples: 4
Max nTPM: 93.0
Min nTPM: 33.7
RHH5316_R3683
77.3
RHH5224_R3596
33.7
RHH5253_R3625
93.0
RHH5282_R3654
83.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.2
Schmiedel sample id
TPM
NK-cell TPM: 65.2
Samples: 90
Max TPM: 97.0
Min TPM: 35.1
NK_1
97.0
NK_2
95.4
NK_3
91.7
NK_4
91.1
NK_5
88.6
NK_6
82.4
NK_7
82.2
NK_8
78.9
NK_9
77.9
NK_10
77.6
NK_11
76.7
NK_12
76.5
NK_13
76.1
NK_14
75.2
NK_15
75.0
NK_16
74.9
NK_17
74.8
NK_18
73.8
NK_19
73.7
NK_20
73.6
NK_21
73.2
NK_22
73.0
NK_23
72.8
NK_24
72.8
NK_25
72.5
NK_26
71.7
NK_27
71.1
NK_28
71.1
NK_29
70.8
NK_30
70.4
NK_31
70.3
NK_32
69.4
NK_33
69.4
NK_34
69.4
NK_35
67.9
NK_36
67.4
NK_37
67.2
NK_38
66.7
NK_39
66.4
NK_40
66.0
NK_41
65.8
NK_42
65.5
NK_43
64.6
NK_44
64.5
NK_45
64.4
NK_46
64.3
NK_47
63.7
NK_48
63.5
NK_49
63.4
NK_50
63.1
NK_51
63.1
NK_52
62.4
NK_53
62.2
NK_54
61.9
NK_55
61.9
NK_56
61.2
NK_57
60.6
NK_58
60.5
NK_59
59.9
NK_60
59.8
NK_61
59.4
NK_62
59.4
NK_63
59.1
NK_64
57.5
NK_65
57.3
NK_66
57.0
NK_67
57.0
NK_68
57.0
NK_69
56.6
NK_70
56.5
NK_71
56.2
NK_72
56.2
NK_73
56.1
NK_74
55.9
NK_75
55.6
NK_76
55.5
NK_77
55.4
NK_78
53.5
NK_79
53.3
NK_80
52.6
NK_81
52.1
NK_82
51.4
NK_83
49.8
NK_84
48.9
NK_85
48.0
NK_86
47.4
NK_87
46.4
NK_88
45.8
NK_89
43.7
NK_90
35.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
