A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
21.9
nTPM
Schmiedel:
45.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Memory B-cell nTPM: 1.0
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.0
P10809_1017
1.8
P10809_1025
0.5
P10809_1044
0.0
P10809_1063
1.3
P10809_1092
0.8
P10809_1105
1.4
Naive B-cell nTPM: 1.6
Samples: 6
Max nTPM: 3.9
Min nTPM: 0.0
P10809_1011
2.2
P10809_1029
1.2
P10809_1048
0.0
P10809_1067
3.9
P10809_1091
0.9
P10809_1104
1.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 18.4
Samples: 4
Max nTPM: 22.0
Min nTPM: 14.2
RHH5310_R3677
14.2
RHH5218_R3590
18.7
RHH5247_R3619
18.5
RHH5276_R3648
22.0
Naive B-cell nTPM: 21.9
Samples: 4
Max nTPM: 27.2
Min nTPM: 15.0
RHH5308_R3675
15.0
RHH5216_R3588
22.7
RHH5245_R3617
22.6
RHH5274_R3646
27.2
Non-switched memory B-cell nTPM: 17.9
Samples: 4
Max nTPM: 22.0
Min nTPM: 14.8
RHH5309_R3676
17.7
RHH5217_R3589
14.8
RHH5246_R3618
17.2
RHH5275_R3647
22.0
Plasmablast nTPM: 17.8
Samples: 4
Max nTPM: 30.5
Min nTPM: 11.8
RHH5312_R3679
15.9
RHH5220_R3592
11.8
RHH5249_R3621
13.0
RHH5278_R3650
30.5
Switched memory B-cell nTPM: 18.4
Samples: 4
Max nTPM: 24.4
Min nTPM: 9.6
RHH5311_R3678
17.2
RHH5219_R3591
9.6
RHH5248_R3620
24.4
RHH5277_R3649
22.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.2
Schmiedel sample id
TPM
Naive B-cell TPM: 45.2
Samples: 91
Max TPM: 113.2
Min TPM: 22.8
B_CELL_NAIVE_1
113.2
B_CELL_NAIVE_2
83.6
B_CELL_NAIVE_3
83.6
B_CELL_NAIVE_4
69.9
B_CELL_NAIVE_5
69.3
B_CELL_NAIVE_6
64.9
B_CELL_NAIVE_7
64.2
B_CELL_NAIVE_8
64.0
B_CELL_NAIVE_9
61.7
B_CELL_NAIVE_10
60.6
B_CELL_NAIVE_11
60.5
B_CELL_NAIVE_12
60.1
B_CELL_NAIVE_13
59.1
B_CELL_NAIVE_14
57.8
B_CELL_NAIVE_15
57.4
B_CELL_NAIVE_16
56.9
B_CELL_NAIVE_17
56.4
B_CELL_NAIVE_18
56.3
B_CELL_NAIVE_19
55.7
B_CELL_NAIVE_20
55.5
B_CELL_NAIVE_21
55.4
B_CELL_NAIVE_22
55.3
B_CELL_NAIVE_23
54.1
B_CELL_NAIVE_24
52.5
B_CELL_NAIVE_25
52.4
B_CELL_NAIVE_26
52.3
B_CELL_NAIVE_27
51.8
B_CELL_NAIVE_28
51.7
B_CELL_NAIVE_29
50.6
B_CELL_NAIVE_30
49.0
B_CELL_NAIVE_31
46.8
B_CELL_NAIVE_32
46.8
B_CELL_NAIVE_33
46.3
B_CELL_NAIVE_34
45.6
B_CELL_NAIVE_35
45.6
B_CELL_NAIVE_36
45.4
B_CELL_NAIVE_37
45.2
B_CELL_NAIVE_38
45.1
B_CELL_NAIVE_39
45.1
B_CELL_NAIVE_40
45.1
B_CELL_NAIVE_41
45.0
B_CELL_NAIVE_42
44.9
B_CELL_NAIVE_43
44.6
B_CELL_NAIVE_44
44.6
B_CELL_NAIVE_45
44.4
B_CELL_NAIVE_46
44.3
B_CELL_NAIVE_47
44.2
B_CELL_NAIVE_48
43.9
B_CELL_NAIVE_49
43.9
B_CELL_NAIVE_50
43.5
B_CELL_NAIVE_51
43.4
B_CELL_NAIVE_52
43.2
B_CELL_NAIVE_53
43.0
B_CELL_NAIVE_54
42.6
B_CELL_NAIVE_55
42.5
B_CELL_NAIVE_56
42.3
B_CELL_NAIVE_57
40.9
B_CELL_NAIVE_58
40.4
B_CELL_NAIVE_59
40.0
B_CELL_NAIVE_60
38.3
B_CELL_NAIVE_61
37.9
B_CELL_NAIVE_62
37.5
B_CELL_NAIVE_63
37.3
B_CELL_NAIVE_64
37.1
B_CELL_NAIVE_65
36.9
B_CELL_NAIVE_66
36.6
B_CELL_NAIVE_67
36.1
B_CELL_NAIVE_68
34.8
B_CELL_NAIVE_69
34.5
B_CELL_NAIVE_70
33.4
B_CELL_NAIVE_71
33.3
B_CELL_NAIVE_72
32.7
B_CELL_NAIVE_73
32.3
B_CELL_NAIVE_74
32.3
B_CELL_NAIVE_75
30.9
B_CELL_NAIVE_76
30.8
B_CELL_NAIVE_77
29.5
B_CELL_NAIVE_78
29.5
B_CELL_NAIVE_79
29.3
B_CELL_NAIVE_80
29.1
B_CELL_NAIVE_81
28.9
B_CELL_NAIVE_82
28.7
B_CELL_NAIVE_83
28.4
B_CELL_NAIVE_84
28.3
B_CELL_NAIVE_85
25.8
B_CELL_NAIVE_86
25.5
B_CELL_NAIVE_87
25.5
B_CELL_NAIVE_88
24.6
B_CELL_NAIVE_89
23.6
B_CELL_NAIVE_90
23.3
B_CELL_NAIVE_91
22.8
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