A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
22.5
nTPM
Schmiedel:
30.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
Classical monocyte nTPM: 1.5
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.7
P10809_1003
1.6
P10809_1020
1.5
P10809_1039
0.7
P10809_1058
1.8
P10809_1080
1.5
P10809_1107
1.8
Intermediate monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.7
P10809_1004
2.2
P10809_1023
0.7
P10809_1042
1.6
P10809_1061
2.0
P10809_1081
1.6
P10809_1108
1.0
Non-classical monocyte nTPM: 1.5
Samples: 5
Max nTPM: 2.3
Min nTPM: 0.7
P10809_1005
1.7
P10809_1053
0.7
P10809_1072
2.3
P10809_1082
1.9
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.5
Monaco sample
nTPM
Classical monocyte nTPM: 18.9
Samples: 4
Max nTPM: 28.3
Min nTPM: 13.9
RHH5313_R3680
16.1
RHH5221_R3593
13.9
RHH5250_R3622
17.4
RHH5279_R3651
28.3
Intermediate monocyte nTPM: 18.1
Samples: 4
Max nTPM: 25.0
Min nTPM: 12.7
RHH5314_R3681
12.7
RHH5222_R3594
18.4
RHH5251_R3623
16.1
RHH5280_R3652
25.0
Non-classical monocyte nTPM: 22.5
Samples: 4
Max nTPM: 28.1
Min nTPM: 19.1
RHH5315_R3682
20.9
RHH5223_R3595
19.1
RHH5252_R3624
21.7
RHH5281_R3653
28.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.9
Schmiedel sample id
TPM
Classical monocyte TPM: 24.3
Samples: 91
Max TPM: 57.5
Min TPM: 12.8
MONOCYTES_1
57.5
MONOCYTES_2
45.8
MONOCYTES_3
44.1
MONOCYTES_4
42.6
MONOCYTES_5
36.6
MONOCYTES_6
35.7
MONOCYTES_7
35.7
MONOCYTES_8
33.3
MONOCYTES_9
33.3
MONOCYTES_10
32.9
MONOCYTES_11
32.6
MONOCYTES_12
32.6
MONOCYTES_13
32.4
MONOCYTES_14
31.4
MONOCYTES_15
31.1
MONOCYTES_16
30.9
MONOCYTES_17
30.8
MONOCYTES_18
30.6
MONOCYTES_19
30.2
MONOCYTES_20
29.5
MONOCYTES_21
29.4
MONOCYTES_22
29.2
MONOCYTES_23
28.8
MONOCYTES_24
28.8
MONOCYTES_25
27.7
MONOCYTES_26
27.2
MONOCYTES_27
27.1
MONOCYTES_28
27.0
MONOCYTES_29
27.0
MONOCYTES_30
26.7
MONOCYTES_31
26.7
MONOCYTES_32
26.2
MONOCYTES_33
25.3
MONOCYTES_34
25.2
MONOCYTES_35
25.1
MONOCYTES_36
24.8
MONOCYTES_37
24.8
MONOCYTES_38
24.7
MONOCYTES_39
24.6
MONOCYTES_40
24.6
MONOCYTES_41
24.5
MONOCYTES_42
24.1
MONOCYTES_43
24.0
MONOCYTES_44
23.8
MONOCYTES_45
23.5
MONOCYTES_46
23.2
MONOCYTES_47
23.0
MONOCYTES_48
23.0
MONOCYTES_49
23.0
MONOCYTES_50
22.9
MONOCYTES_51
22.8
MONOCYTES_52
22.2
MONOCYTES_53
22.1
MONOCYTES_54
22.1
MONOCYTES_55
22.0
MONOCYTES_56
21.8
MONOCYTES_57
21.6
MONOCYTES_58
21.5
MONOCYTES_59
21.0
MONOCYTES_60
21.0
MONOCYTES_61
20.9
MONOCYTES_62
20.9
MONOCYTES_63
20.7
MONOCYTES_64
20.6
MONOCYTES_65
20.4
MONOCYTES_66
20.3
MONOCYTES_67
20.3
MONOCYTES_68
20.3
MONOCYTES_69
19.1
MONOCYTES_70
18.7
MONOCYTES_71
17.7
MONOCYTES_72
17.5
MONOCYTES_73
17.5
MONOCYTES_74
17.5
MONOCYTES_75
17.1
MONOCYTES_76
15.8
MONOCYTES_77
15.5
MONOCYTES_78
15.4
MONOCYTES_79
15.0
MONOCYTES_80
15.0
MONOCYTES_81
14.8
MONOCYTES_82
14.8
MONOCYTES_83
14.6
MONOCYTES_84
14.4
MONOCYTES_85
14.3
MONOCYTES_86
14.1
MONOCYTES_87
14.0
MONOCYTES_88
13.4
MONOCYTES_89
13.2
MONOCYTES_90
12.9
MONOCYTES_91
12.8
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Non-classical monocyte TPM: 30.9
Samples: 90
Max TPM: 79.3
Min TPM: 14.5
M2_1
79.3
M2_2
63.2
M2_3
55.8
M2_4
47.5
M2_5
47.0
M2_6
44.1
M2_7
43.1
M2_8
42.7
M2_9
42.1
M2_10
42.1
M2_11
41.7
M2_12
40.3
M2_13
40.3
M2_14
40.2
M2_15
40.1
M2_16
39.7
M2_17
39.5
M2_18
39.3
M2_19
39.3
M2_20
39.2
M2_21
38.3
M2_22
37.5
M2_23
37.5
M2_24
37.4
M2_25
37.4
M2_26
36.2
M2_27
35.2
M2_28
34.5
M2_29
34.4
M2_30
34.4
M2_31
33.8
M2_32
33.1
M2_33
32.4
M2_34
32.3
M2_35
31.4
M2_36
31.1
M2_37
30.8
M2_38
30.8
M2_39
30.8
M2_40
30.7
M2_41
30.6
M2_42
30.4
M2_43
30.1
M2_44
29.7
M2_45
29.6
M2_46
29.5
M2_47
29.3
M2_48
28.8
M2_49
28.8
M2_50
28.6
M2_51
28.5
M2_52
28.4
M2_53
28.3
M2_54
28.0
M2_55
27.8
M2_56
27.8
M2_57
27.7
M2_58
27.6
M2_59
27.5
M2_60
27.3
M2_61
26.8
M2_62
26.8
M2_63
26.6
M2_64
26.3
M2_65
26.2
M2_66
25.7
M2_67
24.0
M2_68
23.1
M2_69
22.2
M2_70
22.2
M2_71
21.1
M2_72
20.9
M2_73
20.7
M2_74
20.6
M2_75
20.5
M2_76
19.5
M2_77
19.3
M2_78
19.3
M2_79
19.2
M2_80
19.0
M2_81
18.4
M2_82
18.1
M2_83
18.0
M2_84
17.9
M2_85
17.1
M2_86
16.9
M2_87
16.9
M2_88
16.3
M2_89
16.1
M2_90
14.5
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