A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
25.2
nTPM
Schmiedel:
55.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
NK-cell nTPM: 1.0
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1013
2.4
P10809_1033
0.0
P10809_1052
0.7
P10809_1071
1.0
P10809_1093
0.5
P10809_1103
1.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.2
Monaco sample
nTPM
NK-cell nTPM: 25.2
Samples: 4
Max nTPM: 35.9
Min nTPM: 20.4
RHH5316_R3683
21.1
RHH5224_R3596
20.4
RHH5253_R3625
23.5
RHH5282_R3654
35.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.1
Schmiedel sample id
TPM
NK-cell TPM: 55.1
Samples: 90
Max TPM: 135.2
Min TPM: 26.7
NK_1
135.2
NK_2
106.9
NK_3
104.4
NK_4
81.2
NK_5
78.9
NK_6
78.0
NK_7
77.3
NK_8
77.2
NK_9
76.5
NK_10
74.6
NK_11
73.0
NK_12
71.6
NK_13
71.1
NK_14
70.7
NK_15
70.6
NK_16
70.3
NK_17
69.4
NK_18
68.4
NK_19
68.3
NK_20
68.2
NK_21
67.7
NK_22
65.2
NK_23
65.1
NK_24
65.1
NK_25
65.0
NK_26
64.8
NK_27
64.1
NK_28
61.8
NK_29
61.4
NK_30
61.1
NK_31
60.6
NK_32
58.6
NK_33
58.5
NK_34
57.7
NK_35
57.4
NK_36
56.5
NK_37
56.1
NK_38
56.0
NK_39
55.9
NK_40
55.5
NK_41
55.0
NK_42
54.9
NK_43
54.3
NK_44
54.2
NK_45
53.2
NK_46
52.8
NK_47
52.2
NK_48
52.1
NK_49
51.0
NK_50
50.6
NK_51
50.5
NK_52
50.5
NK_53
50.4
NK_54
49.9
NK_55
49.3
NK_56
49.2
NK_57
49.1
NK_58
49.0
NK_59
49.0
NK_60
48.3
NK_61
46.8
NK_62
46.1
NK_63
46.0
NK_64
45.9
NK_65
45.8
NK_66
45.6
NK_67
45.2
NK_68
43.1
NK_69
42.1
NK_70
40.6
NK_71
39.7
NK_72
39.5
NK_73
37.9
NK_74
36.9
NK_75
36.2
NK_76
36.1
NK_77
35.8
NK_78
35.6
NK_79
35.3
NK_80
35.0
NK_81
34.5
NK_82
33.7
NK_83
33.1
NK_84
32.5
NK_85
32.1
NK_86
31.3
NK_87
30.9
NK_88
29.2
NK_89
27.5
NK_90
26.7
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