A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
45.5
nTPM
Monaco:
65.1
nTPM
Schmiedel:
79.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.5
HPA sample
nTPM
Memory B-cell nTPM: 45.5
Samples: 6
Max nTPM: 127.2
Min nTPM: 15.5
P10809_1017
29.7
P10809_1025
26.3
P10809_1044
127.2
P10809_1063
41.5
P10809_1092
32.7
P10809_1105
15.5
Naive B-cell nTPM: 41.0
Samples: 6
Max nTPM: 64.7
Min nTPM: 29.6
P10809_1011
29.6
P10809_1029
33.6
P10809_1048
64.7
P10809_1067
45.7
P10809_1091
40.2
P10809_1104
32.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 60.8
Samples: 4
Max nTPM: 76.2
Min nTPM: 39.2
RHH5310_R3677
39.2
RHH5218_R3590
60.1
RHH5247_R3619
67.7
RHH5276_R3648
76.2
Naive B-cell nTPM: 65.2
Samples: 4
Max nTPM: 95.4
Min nTPM: 46.2
RHH5308_R3675
56.6
RHH5216_R3588
62.4
RHH5245_R3617
95.4
RHH5274_R3646
46.2
Non-switched memory B-cell nTPM: 63.4
Samples: 4
Max nTPM: 78.3
Min nTPM: 43.4
RHH5309_R3676
43.4
RHH5217_R3589
78.3
RHH5246_R3618
63.8
RHH5275_R3647
67.9
Plasmablast nTPM: 27.3
Samples: 4
Max nTPM: 34.6
Min nTPM: 14.0
RHH5312_R3679
27.4
RHH5220_R3592
14.0
RHH5249_R3621
33.1
RHH5278_R3650
34.6
Switched memory B-cell nTPM: 61.4
Samples: 4
Max nTPM: 91.1
Min nTPM: 34.9
RHH5311_R3678
34.9
RHH5219_R3591
50.0
RHH5248_R3620
91.1
RHH5277_R3649
69.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.6
Schmiedel sample id
TPM
Naive B-cell TPM: 79.6
Samples: 91
Max TPM: 152.1
Min TPM: 48.1
B_CELL_NAIVE_1
152.1
B_CELL_NAIVE_2
143.2
B_CELL_NAIVE_3
135.1
B_CELL_NAIVE_4
132.2
B_CELL_NAIVE_5
123.6
B_CELL_NAIVE_6
111.5
B_CELL_NAIVE_7
108.4
B_CELL_NAIVE_8
106.3
B_CELL_NAIVE_9
103.9
B_CELL_NAIVE_10
102.8
B_CELL_NAIVE_11
100.7
B_CELL_NAIVE_12
100.1
B_CELL_NAIVE_13
97.7
B_CELL_NAIVE_14
97.5
B_CELL_NAIVE_15
96.1
B_CELL_NAIVE_16
95.4
B_CELL_NAIVE_17
95.1
B_CELL_NAIVE_18
94.9
B_CELL_NAIVE_19
94.4
B_CELL_NAIVE_20
93.2
B_CELL_NAIVE_21
90.9
B_CELL_NAIVE_22
90.4
B_CELL_NAIVE_23
89.2
B_CELL_NAIVE_24
86.5
B_CELL_NAIVE_25
86.4
B_CELL_NAIVE_26
86.2
B_CELL_NAIVE_27
84.8
B_CELL_NAIVE_28
84.7
B_CELL_NAIVE_29
84.5
B_CELL_NAIVE_30
83.7
B_CELL_NAIVE_31
83.6
B_CELL_NAIVE_32
83.4
B_CELL_NAIVE_33
82.6
B_CELL_NAIVE_34
82.4
B_CELL_NAIVE_35
81.5
B_CELL_NAIVE_36
81.4
B_CELL_NAIVE_37
81.1
B_CELL_NAIVE_38
79.7
B_CELL_NAIVE_39
79.3
B_CELL_NAIVE_40
79.1
B_CELL_NAIVE_41
78.7
B_CELL_NAIVE_42
78.0
B_CELL_NAIVE_43
77.6
B_CELL_NAIVE_44
76.6
B_CELL_NAIVE_45
76.5
B_CELL_NAIVE_46
76.2
B_CELL_NAIVE_47
76.1
B_CELL_NAIVE_48
76.1
B_CELL_NAIVE_49
75.1
B_CELL_NAIVE_50
74.7
B_CELL_NAIVE_51
74.7
B_CELL_NAIVE_52
74.3
B_CELL_NAIVE_53
74.2
B_CELL_NAIVE_54
73.9
B_CELL_NAIVE_55
72.5
B_CELL_NAIVE_56
71.6
B_CELL_NAIVE_57
71.3
B_CELL_NAIVE_58
71.1
B_CELL_NAIVE_59
70.9
B_CELL_NAIVE_60
68.1
B_CELL_NAIVE_61
68.1
B_CELL_NAIVE_62
68.0
B_CELL_NAIVE_63
67.8
B_CELL_NAIVE_64
66.7
B_CELL_NAIVE_65
66.5
B_CELL_NAIVE_66
66.1
B_CELL_NAIVE_67
65.4
B_CELL_NAIVE_68
65.0
B_CELL_NAIVE_69
65.0
B_CELL_NAIVE_70
64.8
B_CELL_NAIVE_71
64.7
B_CELL_NAIVE_72
63.4
B_CELL_NAIVE_73
63.1
B_CELL_NAIVE_74
62.9
B_CELL_NAIVE_75
62.9
B_CELL_NAIVE_76
61.7
B_CELL_NAIVE_77
61.0
B_CELL_NAIVE_78
60.9
B_CELL_NAIVE_79
60.8
B_CELL_NAIVE_80
60.7
B_CELL_NAIVE_81
58.9
B_CELL_NAIVE_82
58.7
B_CELL_NAIVE_83
58.4
B_CELL_NAIVE_84
58.3
B_CELL_NAIVE_85
57.5
B_CELL_NAIVE_86
57.1
B_CELL_NAIVE_87
55.2
B_CELL_NAIVE_88
53.7
B_CELL_NAIVE_89
51.6
B_CELL_NAIVE_90
50.5
B_CELL_NAIVE_91
48.1
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The Human Protein Atlas project is funded
