A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.1
nTPM
Monaco:
69.5
nTPM
Schmiedel:
60.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.1
HPA sample
nTPM
NK-cell nTPM: 36.2
Samples: 6
Max nTPM: 55.2
Min nTPM: 24.4
P10809_1013
32.3
P10809_1033
24.4
P10809_1052
36.7
P10809_1071
39.2
P10809_1093
55.2
P10809_1103
29.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.5
Monaco sample
nTPM
NK-cell nTPM: 69.6
Samples: 4
Max nTPM: 83.9
Min nTPM: 51.5
RHH5316_R3683
66.1
RHH5224_R3596
51.5
RHH5253_R3625
83.9
RHH5282_R3654
76.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.8
Schmiedel sample id
TPM
NK-cell TPM: 60.8
Samples: 90
Max TPM: 124.1
Min TPM: 36.3
NK_1
124.1
NK_2
123.4
NK_3
100.4
NK_4
93.2
NK_5
93.0
NK_6
86.5
NK_7
86.0
NK_8
85.4
NK_9
82.1
NK_10
79.5
NK_11
78.0
NK_12
77.7
NK_13
76.2
NK_14
74.6
NK_15
72.1
NK_16
71.8
NK_17
70.6
NK_18
70.1
NK_19
70.0
NK_20
69.6
NK_21
69.1
NK_22
67.4
NK_23
67.3
NK_24
66.1
NK_25
65.7
NK_26
65.3
NK_27
65.1
NK_28
64.0
NK_29
62.9
NK_30
61.5
NK_31
61.5
NK_32
61.4
NK_33
61.1
NK_34
59.4
NK_35
59.4
NK_36
59.3
NK_37
58.9
NK_38
58.7
NK_39
58.6
NK_40
58.6
NK_41
58.2
NK_42
58.0
NK_43
57.9
NK_44
57.8
NK_45
57.4
NK_46
57.1
NK_47
56.8
NK_48
56.4
NK_49
55.2
NK_50
54.9
NK_51
54.9
NK_52
54.9
NK_53
53.7
NK_54
52.9
NK_55
52.5
NK_56
52.3
NK_57
52.3
NK_58
51.9
NK_59
51.9
NK_60
51.4
NK_61
51.3
NK_62
51.1
NK_63
50.9
NK_64
50.8
NK_65
50.7
NK_66
50.6
NK_67
50.1
NK_68
50.0
NK_69
50.0
NK_70
49.8
NK_71
49.5
NK_72
49.4
NK_73
49.3
NK_74
49.3
NK_75
48.8
NK_76
48.6
NK_77
48.6
NK_78
48.4
NK_79
48.1
NK_80
48.0
NK_81
47.8
NK_82
46.9
NK_83
46.4
NK_84
46.1
NK_85
46.0
NK_86
45.7
NK_87
45.6
NK_88
43.2
NK_89
39.8
NK_90
36.3
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