A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.0
nTPM
Monaco:
101.5
nTPM
Schmiedel:
110.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.0
HPA sample
nTPM
Classical monocyte nTPM: 51.0
Samples: 6
Max nTPM: 67.9
Min nTPM: 32.0
P10809_1003
43.4
P10809_1020
32.0
P10809_1039
51.6
P10809_1058
67.9
P10809_1080
65.4
P10809_1107
45.6
Intermediate monocyte nTPM: 37.5
Samples: 6
Max nTPM: 72.2
Min nTPM: 22.8
P10809_1004
26.1
P10809_1023
26.2
P10809_1042
35.9
P10809_1061
72.2
P10809_1081
41.8
P10809_1108
22.8
Non-classical monocyte nTPM: 44.8
Samples: 5
Max nTPM: 76.9
Min nTPM: 25.5
P10809_1005
25.5
P10809_1053
38.8
P10809_1072
76.9
P10809_1082
51.9
P10809_1109
30.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.5
Monaco sample
nTPM
Classical monocyte nTPM: 97.1
Samples: 4
Max nTPM: 103.7
Min nTPM: 89.3
RHH5313_R3680
103.7
RHH5221_R3593
97.2
RHH5250_R3622
98.2
RHH5279_R3651
89.3
Intermediate monocyte nTPM: 77.6
Samples: 4
Max nTPM: 93.6
Min nTPM: 66.1
RHH5314_R3681
74.1
RHH5222_R3594
66.1
RHH5251_R3623
93.6
RHH5280_R3652
76.5
Non-classical monocyte nTPM: 101.5
Samples: 4
Max nTPM: 126.6
Min nTPM: 74.6
RHH5315_R3682
96.2
RHH5223_R3595
74.6
RHH5252_R3624
126.6
RHH5281_R3653
108.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.3
Schmiedel sample id
TPM
Classical monocyte TPM: 67.8
Samples: 91
Max TPM: 124.0
Min TPM: 38.6
MONOCYTES_1
124.0
MONOCYTES_2
122.6
MONOCYTES_3
115.7
MONOCYTES_4
115.5
MONOCYTES_5
99.7
MONOCYTES_6
96.3
MONOCYTES_7
90.8
MONOCYTES_8
90.6
MONOCYTES_9
89.1
MONOCYTES_10
88.0
MONOCYTES_11
86.3
MONOCYTES_12
84.7
MONOCYTES_13
84.6
MONOCYTES_14
83.3
MONOCYTES_15
82.8
MONOCYTES_16
82.8
MONOCYTES_17
82.6
MONOCYTES_18
82.3
MONOCYTES_19
80.8
MONOCYTES_20
80.0
MONOCYTES_21
79.8
MONOCYTES_22
78.9
MONOCYTES_23
78.0
MONOCYTES_24
77.3
MONOCYTES_25
77.1
MONOCYTES_26
75.9
MONOCYTES_27
75.7
MONOCYTES_28
75.4
MONOCYTES_29
75.0
MONOCYTES_30
75.0
MONOCYTES_31
71.8
MONOCYTES_32
71.6
MONOCYTES_33
70.9
MONOCYTES_34
70.9
MONOCYTES_35
70.8
MONOCYTES_36
70.7
MONOCYTES_37
70.0
MONOCYTES_38
69.4
MONOCYTES_39
68.9
MONOCYTES_40
68.7
MONOCYTES_41
68.1
MONOCYTES_42
66.4
MONOCYTES_43
66.1
MONOCYTES_44
66.0
MONOCYTES_45
66.0
MONOCYTES_46
65.9
MONOCYTES_47
64.6
MONOCYTES_48
64.1
MONOCYTES_49
64.0
MONOCYTES_50
63.9
MONOCYTES_51
63.0
MONOCYTES_52
61.9
MONOCYTES_53
61.7
MONOCYTES_54
61.3
MONOCYTES_55
60.9
MONOCYTES_56
60.9
MONOCYTES_57
60.3
MONOCYTES_58
58.7
MONOCYTES_59
58.5
MONOCYTES_60
57.7
MONOCYTES_61
57.0
MONOCYTES_62
56.6
MONOCYTES_63
56.6
MONOCYTES_64
56.4
MONOCYTES_65
56.3
MONOCYTES_66
56.2
MONOCYTES_67
55.7
MONOCYTES_68
54.4
MONOCYTES_69
54.2
MONOCYTES_70
54.1
MONOCYTES_71
53.6
MONOCYTES_72
53.5
MONOCYTES_73
53.4
MONOCYTES_74
53.4
MONOCYTES_75
53.1
MONOCYTES_76
53.1
MONOCYTES_77
53.1
MONOCYTES_78
51.2
MONOCYTES_79
50.9
MONOCYTES_80
50.4
MONOCYTES_81
49.4
MONOCYTES_82
49.1
MONOCYTES_83
48.3
MONOCYTES_84
48.2
MONOCYTES_85
45.5
MONOCYTES_86
45.2
MONOCYTES_87
44.8
MONOCYTES_88
43.6
MONOCYTES_89
42.1
MONOCYTES_90
39.2
MONOCYTES_91
38.6
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Non-classical monocyte TPM: 110.3
Samples: 90
Max TPM: 244.0
Min TPM: 45.9
M2_1
244.0
M2_2
192.1
M2_3
176.2
M2_4
174.5
M2_5
165.3
M2_6
161.8
M2_7
161.6
M2_8
156.6
M2_9
154.9
M2_10
153.9
M2_11
151.4
M2_12
149.2
M2_13
148.4
M2_14
148.3
M2_15
139.1
M2_16
137.5
M2_17
135.7
M2_18
134.7
M2_19
127.1
M2_20
126.3
M2_21
126.2
M2_22
126.1
M2_23
123.4
M2_24
122.0
M2_25
121.1
M2_26
119.8
M2_27
117.6
M2_28
116.7
M2_29
116.3
M2_30
115.9
M2_31
114.3
M2_32
114.3
M2_33
113.2
M2_34
113.0
M2_35
111.9
M2_36
110.8
M2_37
110.6
M2_38
110.4
M2_39
110.0
M2_40
108.9
M2_41
108.0
M2_42
107.8
M2_43
106.8
M2_44
105.5
M2_45
105.3
M2_46
105.3
M2_47
103.7
M2_48
102.6
M2_49
101.5
M2_50
101.4
M2_51
101.2
M2_52
101.0
M2_53
100.7
M2_54
98.4
M2_55
97.7
M2_56
97.2
M2_57
96.1
M2_58
95.5
M2_59
95.2
M2_60
93.4
M2_61
93.2
M2_62
93.1
M2_63
93.1
M2_64
91.9
M2_65
91.4
M2_66
89.0
M2_67
88.9
M2_68
88.0
M2_69
86.8
M2_70
86.7
M2_71
85.6
M2_72
85.4
M2_73
85.2
M2_74
83.5
M2_75
83.4
M2_76
82.9
M2_77
82.5
M2_78
82.3
M2_79
82.0
M2_80
81.6
M2_81
79.7
M2_82
79.3
M2_83
77.1
M2_84
75.5
M2_85
73.5
M2_86
71.5
M2_87
70.0
M2_88
68.8
M2_89
65.6
M2_90
45.9
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