A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.0
nTPM
Monaco:
85.0
nTPM
Schmiedel:
50.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.0
HPA sample
nTPM
Memory B-cell nTPM: 21.0
Samples: 6
Max nTPM: 24.5
Min nTPM: 16.2
P10809_1017
21.3
P10809_1025
21.5
P10809_1044
16.2
P10809_1063
21.7
P10809_1092
20.7
P10809_1105
24.5
Naive B-cell nTPM: 17.6
Samples: 6
Max nTPM: 31.8
Min nTPM: 11.1
P10809_1011
11.1
P10809_1029
12.4
P10809_1048
31.8
P10809_1067
16.0
P10809_1091
13.4
P10809_1104
20.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 61.4
Samples: 4
Max nTPM: 71.3
Min nTPM: 54.4
RHH5310_R3677
59.7
RHH5218_R3590
71.3
RHH5247_R3619
60.2
RHH5276_R3648
54.4
Naive B-cell nTPM: 45.9
Samples: 4
Max nTPM: 75.7
Min nTPM: 34.8
RHH5308_R3675
36.7
RHH5216_R3588
75.7
RHH5245_R3617
36.4
RHH5274_R3646
34.8
Non-switched memory B-cell nTPM: 55.2
Samples: 4
Max nTPM: 61.9
Min nTPM: 49.3
RHH5309_R3676
49.3
RHH5217_R3589
54.8
RHH5246_R3618
61.9
RHH5275_R3647
54.6
Plasmablast nTPM: 85.0
Samples: 4
Max nTPM: 105.0
Min nTPM: 66.3
RHH5312_R3679
92.5
RHH5220_R3592
105.0
RHH5249_R3621
66.3
RHH5278_R3650
76.3
Switched memory B-cell nTPM: 59.6
Samples: 4
Max nTPM: 81.3
Min nTPM: 46.3
RHH5311_R3678
60.1
RHH5219_R3591
50.5
RHH5248_R3620
81.3
RHH5277_R3649
46.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.4
Schmiedel sample id
TPM
Naive B-cell TPM: 50.4
Samples: 91
Max TPM: 79.3
Min TPM: 29.7
B_CELL_NAIVE_1
79.3
B_CELL_NAIVE_2
75.8
B_CELL_NAIVE_3
74.8
B_CELL_NAIVE_4
70.5
B_CELL_NAIVE_5
70.3
B_CELL_NAIVE_6
68.5
B_CELL_NAIVE_7
65.5
B_CELL_NAIVE_8
65.1
B_CELL_NAIVE_9
64.3
B_CELL_NAIVE_10
63.5
B_CELL_NAIVE_11
62.7
B_CELL_NAIVE_12
62.5
B_CELL_NAIVE_13
60.2
B_CELL_NAIVE_14
59.8
B_CELL_NAIVE_15
59.6
B_CELL_NAIVE_16
59.1
B_CELL_NAIVE_17
58.7
B_CELL_NAIVE_18
58.7
B_CELL_NAIVE_19
58.4
B_CELL_NAIVE_20
58.2
B_CELL_NAIVE_21
57.1
B_CELL_NAIVE_22
55.8
B_CELL_NAIVE_23
55.8
B_CELL_NAIVE_24
55.6
B_CELL_NAIVE_25
55.2
B_CELL_NAIVE_26
55.1
B_CELL_NAIVE_27
54.7
B_CELL_NAIVE_28
54.6
B_CELL_NAIVE_29
54.2
B_CELL_NAIVE_30
54.1
B_CELL_NAIVE_31
53.8
B_CELL_NAIVE_32
53.6
B_CELL_NAIVE_33
53.4
B_CELL_NAIVE_34
53.3
B_CELL_NAIVE_35
52.3
B_CELL_NAIVE_36
52.0
B_CELL_NAIVE_37
51.9
B_CELL_NAIVE_38
51.9
B_CELL_NAIVE_39
51.0
B_CELL_NAIVE_40
50.8
B_CELL_NAIVE_41
50.7
B_CELL_NAIVE_42
50.5
B_CELL_NAIVE_43
50.3
B_CELL_NAIVE_44
50.1
B_CELL_NAIVE_45
50.0
B_CELL_NAIVE_46
49.9
B_CELL_NAIVE_47
49.3
B_CELL_NAIVE_48
49.2
B_CELL_NAIVE_49
48.8
B_CELL_NAIVE_50
48.5
B_CELL_NAIVE_51
48.3
B_CELL_NAIVE_52
48.2
B_CELL_NAIVE_53
48.0
B_CELL_NAIVE_54
47.5
B_CELL_NAIVE_55
47.4
B_CELL_NAIVE_56
47.2
B_CELL_NAIVE_57
46.9
B_CELL_NAIVE_58
46.6
B_CELL_NAIVE_59
46.5
B_CELL_NAIVE_60
46.3
B_CELL_NAIVE_61
46.0
B_CELL_NAIVE_62
45.9
B_CELL_NAIVE_63
45.7
B_CELL_NAIVE_64
45.2
B_CELL_NAIVE_65
44.5
B_CELL_NAIVE_66
44.2
B_CELL_NAIVE_67
43.9
B_CELL_NAIVE_68
43.7
B_CELL_NAIVE_69
43.4
B_CELL_NAIVE_70
42.9
B_CELL_NAIVE_71
42.9
B_CELL_NAIVE_72
41.8
B_CELL_NAIVE_73
41.7
B_CELL_NAIVE_74
41.1
B_CELL_NAIVE_75
40.7
B_CELL_NAIVE_76
40.5
B_CELL_NAIVE_77
40.2
B_CELL_NAIVE_78
39.6
B_CELL_NAIVE_79
39.4
B_CELL_NAIVE_80
39.3
B_CELL_NAIVE_81
38.3
B_CELL_NAIVE_82
38.1
B_CELL_NAIVE_83
37.4
B_CELL_NAIVE_84
37.1
B_CELL_NAIVE_85
37.1
B_CELL_NAIVE_86
36.6
B_CELL_NAIVE_87
36.4
B_CELL_NAIVE_88
35.7
B_CELL_NAIVE_89
33.2
B_CELL_NAIVE_90
31.1
B_CELL_NAIVE_91
29.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
