A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
67.1
nTPM
Monaco:
128.2
nTPM
Schmiedel:
83.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.1
HPA sample
nTPM
Classical monocyte nTPM: 34.2
Samples: 6
Max nTPM: 40.6
Min nTPM: 28.6
P10809_1003
34.6
P10809_1020
35.9
P10809_1039
36.0
P10809_1058
29.5
P10809_1080
40.6
P10809_1107
28.6
Intermediate monocyte nTPM: 42.5
Samples: 6
Max nTPM: 51.6
Min nTPM: 34.5
P10809_1004
40.6
P10809_1023
47.1
P10809_1042
51.6
P10809_1061
42.4
P10809_1081
34.5
P10809_1108
38.6
Non-classical monocyte nTPM: 67.1
Samples: 5
Max nTPM: 78.5
Min nTPM: 56.7
P10809_1005
58.5
P10809_1053
69.0
P10809_1072
78.5
P10809_1082
56.7
P10809_1109
72.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.2
Monaco sample
nTPM
Classical monocyte nTPM: 92.4
Samples: 4
Max nTPM: 105.1
Min nTPM: 68.9
RHH5313_R3680
98.5
RHH5221_R3593
105.1
RHH5250_R3622
97.1
RHH5279_R3651
68.9
Intermediate monocyte nTPM: 109.6
Samples: 4
Max nTPM: 135.5
Min nTPM: 85.1
RHH5314_R3681
85.1
RHH5222_R3594
108.2
RHH5251_R3623
135.5
RHH5280_R3652
109.5
Non-classical monocyte nTPM: 128.2
Samples: 4
Max nTPM: 155.3
Min nTPM: 97.3
RHH5315_R3682
111.0
RHH5223_R3595
149.1
RHH5252_R3624
97.3
RHH5281_R3653
155.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.2
Schmiedel sample id
TPM
Classical monocyte TPM: 38.1
Samples: 91
Max TPM: 53.7
Min TPM: 28.5
MONOCYTES_1
53.7
MONOCYTES_2
49.0
MONOCYTES_3
48.0
MONOCYTES_4
46.4
MONOCYTES_5
46.3
MONOCYTES_6
46.3
MONOCYTES_7
46.1
MONOCYTES_8
45.6
MONOCYTES_9
45.2
MONOCYTES_10
44.5
MONOCYTES_11
44.1
MONOCYTES_12
44.0
MONOCYTES_13
43.7
MONOCYTES_14
43.3
MONOCYTES_15
43.2
MONOCYTES_16
43.1
MONOCYTES_17
43.1
MONOCYTES_18
42.0
MONOCYTES_19
42.0
MONOCYTES_20
41.8
MONOCYTES_21
41.8
MONOCYTES_22
41.7
MONOCYTES_23
41.5
MONOCYTES_24
41.5
MONOCYTES_25
41.1
MONOCYTES_26
41.0
MONOCYTES_27
40.7
MONOCYTES_28
40.3
MONOCYTES_29
40.2
MONOCYTES_30
40.1
MONOCYTES_31
40.1
MONOCYTES_32
40.0
MONOCYTES_33
39.6
MONOCYTES_34
39.4
MONOCYTES_35
39.4
MONOCYTES_36
39.3
MONOCYTES_37
39.1
MONOCYTES_38
38.8
MONOCYTES_39
38.7
MONOCYTES_40
38.7
MONOCYTES_41
38.4
MONOCYTES_42
38.3
MONOCYTES_43
37.9
MONOCYTES_44
37.9
MONOCYTES_45
37.9
MONOCYTES_46
37.9
MONOCYTES_47
37.7
MONOCYTES_48
37.6
MONOCYTES_49
37.2
MONOCYTES_50
37.1
MONOCYTES_51
37.1
MONOCYTES_52
36.9
MONOCYTES_53
36.7
MONOCYTES_54
36.7
MONOCYTES_55
36.7
MONOCYTES_56
36.7
MONOCYTES_57
36.2
MONOCYTES_58
36.0
MONOCYTES_59
35.9
MONOCYTES_60
35.8
MONOCYTES_61
35.7
MONOCYTES_62
35.7
MONOCYTES_63
35.5
MONOCYTES_64
35.4
MONOCYTES_65
35.0
MONOCYTES_66
34.7
MONOCYTES_67
34.4
MONOCYTES_68
34.2
MONOCYTES_69
34.1
MONOCYTES_70
33.8
MONOCYTES_71
33.8
MONOCYTES_72
33.7
MONOCYTES_73
33.6
MONOCYTES_74
33.4
MONOCYTES_75
33.4
MONOCYTES_76
32.9
MONOCYTES_77
32.8
MONOCYTES_78
32.6
MONOCYTES_79
32.3
MONOCYTES_80
32.1
MONOCYTES_81
32.0
MONOCYTES_82
31.8
MONOCYTES_83
31.7
MONOCYTES_84
31.6
MONOCYTES_85
30.7
MONOCYTES_86
30.6
MONOCYTES_87
30.6
MONOCYTES_88
30.2
MONOCYTES_89
30.2
MONOCYTES_90
29.0
MONOCYTES_91
28.5
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Non-classical monocyte TPM: 83.2
Samples: 90
Max TPM: 138.4
Min TPM: 55.8
M2_1
138.4
M2_2
123.6
M2_3
116.4
M2_4
115.1
M2_5
108.9
M2_6
108.2
M2_7
107.1
M2_8
105.8
M2_9
105.1
M2_10
104.2
M2_11
103.7
M2_12
100.1
M2_13
99.8
M2_14
98.5
M2_15
97.4
M2_16
96.4
M2_17
95.8
M2_18
95.8
M2_19
93.9
M2_20
93.7
M2_21
93.4
M2_22
92.6
M2_23
91.3
M2_24
90.3
M2_25
89.9
M2_26
89.7
M2_27
89.5
M2_28
88.8
M2_29
88.5
M2_30
88.4
M2_31
87.0
M2_32
86.9
M2_33
86.4
M2_34
85.7
M2_35
85.6
M2_36
84.9
M2_37
84.8
M2_38
84.3
M2_39
83.8
M2_40
83.0
M2_41
82.8
M2_42
82.1
M2_43
81.9
M2_44
81.7
M2_45
81.5
M2_46
81.2
M2_47
81.1
M2_48
81.1
M2_49
80.9
M2_50
79.5
M2_51
79.3
M2_52
79.1
M2_53
78.4
M2_54
78.3
M2_55
77.4
M2_56
77.3
M2_57
76.9
M2_58
76.8
M2_59
76.0
M2_60
76.0
M2_61
75.3
M2_62
75.1
M2_63
74.6
M2_64
74.1
M2_65
74.0
M2_66
73.9
M2_67
73.9
M2_68
73.7
M2_69
73.4
M2_70
73.2
M2_71
72.7
M2_72
72.6
M2_73
69.8
M2_74
68.9
M2_75
68.0
M2_76
67.4
M2_77
67.2
M2_78
66.9
M2_79
66.7
M2_80
66.6
M2_81
65.8
M2_82
65.1
M2_83
64.3
M2_84
61.9
M2_85
61.0
M2_86
61.0
M2_87
59.2
M2_88
58.3
M2_89
56.0
M2_90
55.8
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