A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
38.2
nTPM
Monaco:
74.9
nTPM
Schmiedel:
48.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.2
HPA sample
nTPM
NK-cell nTPM: 38.2
Samples: 6
Max nTPM: 53.8
Min nTPM: 25.8
P10809_1013
35.0
P10809_1033
38.2
P10809_1052
25.8
P10809_1071
35.1
P10809_1093
53.8
P10809_1103
41.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.9
Monaco sample
nTPM
NK-cell nTPM: 74.9
Samples: 4
Max nTPM: 92.8
Min nTPM: 61.0
RHH5316_R3683
65.9
RHH5224_R3596
92.8
RHH5253_R3625
61.0
RHH5282_R3654
79.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.7
Schmiedel sample id
TPM
NK-cell TPM: 48.7
Samples: 90
Max TPM: 89.8
Min TPM: 30.2
NK_1
89.8
NK_2
83.7
NK_3
73.9
NK_4
72.3
NK_5
70.7
NK_6
68.4
NK_7
66.2
NK_8
65.9
NK_9
65.5
NK_10
65.3
NK_11
64.5
NK_12
63.8
NK_13
62.4
NK_14
62.4
NK_15
61.0
NK_16
60.6
NK_17
59.9
NK_18
59.5
NK_19
59.2
NK_20
58.7
NK_21
58.6
NK_22
58.2
NK_23
55.4
NK_24
54.3
NK_25
52.8
NK_26
52.7
NK_27
52.1
NK_28
52.0
NK_29
51.9
NK_30
51.5
NK_31
51.4
NK_32
51.3
NK_33
51.3
NK_34
50.0
NK_35
50.0
NK_36
49.7
NK_37
48.5
NK_38
48.3
NK_39
48.3
NK_40
48.0
NK_41
47.8
NK_42
47.7
NK_43
47.5
NK_44
46.8
NK_45
46.7
NK_46
46.6
NK_47
46.4
NK_48
46.3
NK_49
46.3
NK_50
45.3
NK_51
45.1
NK_52
44.5
NK_53
44.3
NK_54
44.2
NK_55
44.2
NK_56
44.2
NK_57
43.6
NK_58
43.1
NK_59
42.9
NK_60
42.8
NK_61
42.0
NK_62
41.8
NK_63
40.9
NK_64
40.5
NK_65
40.5
NK_66
39.9
NK_67
39.9
NK_68
39.6
NK_69
39.5
NK_70
39.4
NK_71
39.1
NK_72
38.8
NK_73
38.6
NK_74
38.2
NK_75
37.1
NK_76
36.0
NK_77
35.9
NK_78
35.9
NK_79
35.7
NK_80
35.7
NK_81
35.0
NK_82
34.8
NK_83
34.7
NK_84
34.7
NK_85
34.6
NK_86
33.5
NK_87
33.3
NK_88
32.3
NK_89
31.9
NK_90
30.2
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