On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
31.2
nTPM
HPA Brain:
66.9
nTPM
GTEx:
31.2
nTPM
FANTOM5:
7.3
Scaled Tags Per Million
Macaque:
55.2
nTPM
Mouse:
90.3
nTPM
Rat:
60.0
nTPM
Pig:
32.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 31.1
2828
Female, age 72, unknown
43.6
2019
Male, age 18, unknown
43.3
2219
Male, age 76, both hemispheres
38.5
2411
Female, age 72, unknown
31.8
1870
Female, age 42, unknown
30.4
1827
Male, age 72, unknown
29.1
1833
Male, age 53, unknown
27.2
1830
Male, age 51, unknown
25.2
2666
Male, age 74, left hemisphere
24.5
2586
Male, age 75, left hemisphere
17.9
Dorsal raphe nucleus nTPM: 19.8
2750
Male, age 76, both hemispheres
24.9
2298
Female, age 72, unknown
20.4
2047
Male, age 72, unknown
18.8
1828
Male, age 53, unknown
17.4
2016
Female, age 72, unknown
17.4
Inferior colliculus nTPM: 39.6
2097
Female, age 72, unknown
46.5
1848
Female, age 42, unknown
43.3
1890
Male, age 53, unknown
37.0
2849
Male, age 72, unknown
31.5
Median raphe nucleus nTPM: 27.4
2220
Male, age 76, midline
27.4
Periaquaductal grey, anterior nTPM: 27.8
1795
Male, age 51, unknown
36.8
2502
Female, age 75, unknown
23.6
1947
Male, age 18, unknown
23.0
Periaquaductal grey, dorsal nTPM: 28.7
1831
Male, age 72, unknown
34.6
2464
Female, age 72, unknown
31.2
1840
Male, age 53, unknown
28.3
2850
Male, age 76, both hemispheres
20.9
Periaquaductal grey, lateral nTPM: 20.3
2053
Male, age 18, unknown
25.9
2140
Male, age 76, both hemispheres
20.3
2272
Male, age 74, both hemispheres
14.8
Pretectal area nTPM: 66.9
2667
Female, age 75, unknown
171.6
1944
Female, age 72, unknown
102.5
1816
Male, age 51, unknown
93.1
1815
Male, age 53, unknown
92.2
2007
Male, age 72, unknown
74.3
1817
Female, age 42, unknown
68.3
2273
Male, age 74, both hemispheres
32.2
2316
Male, age 76, right hemisphere
29.7
2224
Female, age 72, unknown
28.6
2825
Male, age 18, unknown
22.1
2407
Male, age 75, both hemispheres
21.1
Red nucleus nTPM: 24.7
2785
Male, age 18, unknown
46.0
1954
Female, age 42, unknown
31.9
1821
Female, age 72, unknown
28.0
2823
Male, age 76, right hemisphere
27.4
1904
Male, age 53, unknown
25.2
2227
Male, age 72, unknown
22.7
2503
Female, age 72, unknown
22.4
1865
Male, age 51, unknown
22.0
2584
Male, age 75, left hemisphere
21.9
2769
Male, age 72, unknown
21.6
2588
Male, age 74, left hemisphere
16.1
2725
Female, age 75, unknown
11.3
Substantia nigra nTPM: 40.7
1889
Female, age 72, unknown
74.0
2665
Male, age 74, both hemispheres
54.5
2409
Female, age 72, unknown
47.4
1916
Female, age 42, unknown
44.2
2241
Male, age 72, unknown
42.3
1941
Male, age 53, unknown
40.6
1851
Male, age 51, unknown
39.0
2699
Male, age 18, unknown
23.2
2583
Male, age 75, right hemisphere
23.1
2590
Female, age 75, unknown
18.7
Superior colliculus nTPM: 50.2
2087
Female, age 72, unknown
133.7
1913
Female, age 42, unknown
65.5
2668
Female, age 75, unknown
61.6
2261
Male, age 18, unknown
54.4
1895
Male, age 76, right hemisphere
43.5
1796
Male, age 53, unknown
35.5
1995
Male, age 72, unknown
34.0
1839
Male, age 51, unknown
30.6
2587
Male, age 74, left hemisphere
24.6
2664
Male, age 75, both hemispheres
18.7
Ventral tegmental area nTPM: 35.2
1915
Female, age 42, unknown
45.7
2223
Female, age 72, unknown
44.3
2410
Female, age 72, unknown
36.7
2218
Male, age 76, both hemispheres
32.2
2021
Male, age 53, unknown
27.3
1942
Male, age 51, unknown
25.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 31.2
Samples: 183
Max nTPM: 322.1
Min nTPM: 4.1
Std nTPM: 33.4
Median nTPM: 23.9
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
322.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
224.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
162.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
113.3
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
95.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
86.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
84.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
79.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
76.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
76.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
75.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
74.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
72.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
71.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
67.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
61.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
60.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
57.9
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
57.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
53.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
51.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
51.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
51.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
50.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
49.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
49.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
49.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
46.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
40.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
40.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
40.6
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
39.8
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
39.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
38.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
38.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
37.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
37.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
37.3
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
35.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
34.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
34.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
34.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
34.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
34.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
33.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
33.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
33.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
33.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
33.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
33.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
33.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
33.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
32.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
31.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
31.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
31.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
31.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
30.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
30.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
29.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
29.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
29.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
28.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
28.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
28.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
28.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
28.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
28.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
27.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
27.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
27.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
27.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
27.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
27.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
27.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
27.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
26.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
26.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
26.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
25.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
25.7
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
25.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
25.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
25.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
25.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
25.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
24.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
24.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
24.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
24.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
24.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
23.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
23.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
22.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
22.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
22.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
22.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
22.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
21.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
21.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
21.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
21.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
21.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
21.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
21.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
20.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
20.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
20.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
20.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
20.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
19.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
18.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
18.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
18.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
18.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
18.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
18.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
18.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
17.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
17.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
17.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
17.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
17.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
17.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
17.5
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
17.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
17.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
17.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
17.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
16.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
16.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
16.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
16.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
15.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
15.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
15.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
15.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
15.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
15.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
14.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
14.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
14.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
13.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
13.8
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
13.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
13.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
13.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
13.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
12.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
12.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
12.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
12.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
12.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
11.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
11.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
11.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
11.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
10.9
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
10.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
10.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
9.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
9.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
9.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
9.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
9.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
8.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
7.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
7.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
6.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
6.1
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
5.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
5.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
5.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
5.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
5.5
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
4.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
4.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 48.6
Samples: 1
Max nTPM: 48.6
Min nTPM: 48.6
Sample A
48.6
Midbrain nTPM: 44.1
Samples: 1
Max nTPM: 44.1
Min nTPM: 44.1
Sample A
44.1
Superior colliculi nTPM: 55.2
Samples: 1
Max nTPM: 55.2
Min nTPM: 55.2
Sample A
55.2
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 18.2
Samples: 3
Max nTPM: 20.1
Min nTPM: 15.5
Sample A
Female
20.1
Sample B
Female
15.5
Sample C
Male
18.9
Midbrain nTPM: 32.5
Samples: 3
Max nTPM: 40.9
Min nTPM: 17.9
Sample B
Female
17.9
Sample C
Male
40.9
Sample D
Male
38.7
Periaqueductal gray nTPM: 15.3
Samples: 3
Max nTPM: 16.6
Min nTPM: 14.2
Sample B
Female
15.2
Sample C
Male
16.6
Sample D
Male
14.2
Superior colliculi nTPM: 30.0
Samples: 4
Max nTPM: 33.0
Min nTPM: 21.7
Sample A
Female
33.0
Sample B
Female
21.7
Sample C
Male
32.7
Sample D
Male
32.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 90.3
Samples: 4
Max nTPM: 95.3
Min nTPM: 87.1
Sample A
95.3
Sample B
87.1
Sample C
88.7
Sample D
90.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 60.0
Samples: 4
Max nTPM: 62.0
Min nTPM: 57.8
Sample A
62.0
Sample A
58.9
Sample A
57.8
Sample A
61.2
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The Human Protein Atlas project is funded
