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BETA
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  • TF
EVOLUTIONARY MEDULLA OBLONGATA Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS
MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:1585.9 nTPM
FANTOM5:1516.6 Scaled Tags Per Million
Macaque:642.2 nTPM
Mouse:735.2 nTPM
Pig:1240.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1585.9
Sample id Sample description nTPM
Area postrema
nTPM: 678.6
2306 Male, age 80, both hemispheres 868.7
2799 Male, age 61, both hemispheres 704.8
2054 Male, age 76, both hemispheres 462.3
Dorsal medullary reticular nucleus
nTPM: 930.8
2040 Female, age 85, both hemispheres 1019.1
2373 Male, age 61, both hemispheres 957.4
2088 Male, age 76, both hemispheres 815.8
Dorsal motor vagal complex
nTPM: 466.1
2185 Male, age 76, both hemispheres 753.9
2000 Male, age 74, unknown 588.0
2133 Female, age 91, both hemispheres 579.4
2807 Female, age 85, both hemispheres 497.6
2797 Male, age 61, both hemispheres 372.4
2643 Male, age 74, both hemispheres 337.6
2844 Male, age 55, unknown 330.8
2813 Female, age 72, unknown 268.7
Gigantocellular reticular nuclei, medullary
nTPM: 1035.1
2314 Male, age 61, both hemispheres 1790.1
2387 Female, age 91, both hemispheres 1281.5
1876 Female, age 85, both hemispheres 1193.6
2310 Male, age 80, both hemispheres 823.8
2022 Male, age 76, right hemisphere 573.7
2462 Male, age 74, both hemispheres 547.6
Gigantocellular reticular nuclei, pars
nTPM: 763.5
2336 Male, age 61, both hemispheres 874.8
2706 Male, age 80, both hemispheres 802.8
2330 Male, age 80, both hemispheres 779.9
2084 Female, age 85, both hemispheres 768.0
2168 Male, age 76, both hemispheres 591.9
Inferior olive
nTPM: 1073.3
2178 Male, age 61, both hemispheres 1479.5
2085 Female, age 85, both hemispheres 1096.0
2563 Male, age 74, both hemispheres 1056.5
2379 Male, age 80, both hemispheres 1004.2
2628 Female, age 91, both hemispheres 730.1
Lateral medullary reticular nucleus
nTPM: 1052.0
2305 Male, age 74, both hemispheres 1289.2
2852 Male, age 80, both hemispheres 1286.6
2190 Female, age 85, both hemispheres 1144.8
2374 Male, age 61, both hemispheres 992.8
2804 Female, age 91, both hemispheres 827.1
2044 Male, age 76, both hemispheres 771.4
Medial olivary nucleus
nTPM: 1236.3
1943 Male, age 61, both hemispheres 1825.7
1962 Male, age 76, both hemispheres 1296.9
2138 Female, age 91, both hemispheres 1046.7
2851 Male, age 80, both hemispheres 775.8
Medial vestibular nucleus
nTPM: 843.5
2093 Male, age 80, both hemispheres 1129.1
2801 Male, age 74, both hemispheres 1104.3
2803 Female, age 91, both hemispheres 973.1
2743 Female, age 85, both hemispheres 768.9
2624 Male, age 61, both hemispheres 712.2
2134 Male, age 76, both hemispheres 373.5
Motor hypoglossal nucleus
nTPM: 745.3
2125 Female, age 91, both hemispheres 1183.5
2132 Female, age 85, both hemispheres 1116.2
2182 Male, age 80, both hemispheres 899.5
2277 Male, age 76, both hemispheres 270.7
2461 Male, age 61, both hemispheres 256.9
Nucleus ambiguus
nTPM: 1103.1
2071 Male, age 76, both hemispheres 1345.5
2096 Female, age 85, both hemispheres 860.7
Nucleus cuneatus
nTPM: 968.6
2380 Male, age 80, both hemispheres 1363.3
2376 Male, age 61, both hemispheres 1351.7
2808 Female, age 85, both hemispheres 1231.0
2381 Male, age 80, both hemispheres 1220.4
2100 Male, age 76, both hemispheres 927.0
2564 Male, age 74, both hemispheres 835.8
2131 Male, age 76, both hemispheres 701.6
2562 Male, age 61, both hemispheres 548.4
2805 Female, age 91, both hemispheres 538.1
Nucleus gracilis
nTPM: 987.0
2382 Male, age 80, both hemispheres 1325.7
2299 Female, age 85, both hemispheres 835.1
2627 Male, age 74, both hemispheres 800.1
Nucleus raphe obscurus
nTPM: 1585.9
2845 Female, age 85, midline 1765.9
2800 Male, age 61, midline 1697.8
2142 Male, age 76, midline 1294.0
Nucleus raphe pallidus
nTPM: 1462.3
1924 Male, age 61, midline 2059.6
2145 Male, age 76, midline 1302.9
2183 Male, age 80, midline 1024.2
Nucleus tractus solitarii
nTPM: 348.3
2144 Female, age 91, right hemisphere 370.4
2191 Female, age 85, both hemispheres 347.1
2656 Male, age 76, both hemispheres 338.8
2307 Male, age 80, both hemispheres 337.0
Parvicellular reticular nuclei
nTPM: 832.4
2119 Male, age 80, both hemispheres 1037.2
2095 Male, age 76, both hemispheres 884.0
2558 Male, age 74, both hemispheres 576.1
Parvicellular reticular nuclei, medullary
nTPM: 723.2
2189 Female, age 91, both hemispheres 793.3
2091 Female, age 85, both hemispheres 760.8
2181 Male, age 80, left hemisphere 615.4
Peritrigeminal nucleus
nTPM: 1022.3
2067 Female, age 85, both hemispheres 1124.2
2179 Male, age 61, both hemispheres 1055.9
2136 Male, age 76, both hemispheres 886.7
Prepositus hypoglossal nucleus
nTPM: 1002.2
2855 Female, age 85, right hemisphere 1418.5
2086 Male, age 80, both hemispheres 585.9
Spinal trigeminal nucleus, caudal
nTPM: 858.2
2312 Male, age 61, both hemispheres 1161.4
2308 Male, age 80, both hemispheres 947.6
2447 Male, age 76, both hemispheres 882.9
2390 Female, age 91, both hemispheres 756.8
2642 Male, age 74, both hemispheres 542.1
Spinal trigeminal nucleus, interpolar
nTPM: 679.0
2386 Female, age 85, both hemispheres 842.3
2033 Male, age 80, both hemispheres 816.4
2389 Female, age 91, both hemispheres 775.4
2066 Male, age 76, right hemisphere 596.9
2625 Male, age 61, both hemispheres 364.2
Spinal vestibular nucleus
nTPM: 866.0
2748 Male, age 76, both hemispheres 1104.6
2806 Female, age 85, both hemispheres 1023.4
2186 Female, age 91, both hemispheres 888.4
2384 Male, age 74, both hemispheres 859.9
2780 Male, age 80, both hemispheres 834.8
2796 Male, age 61, both hemispheres 485.1
Superior vestibular nucleus
nTPM: 761.4
2015 Male, age 80, both hemispheres 984.4
2061 Male, age 76, both hemispheres 686.5
2383 Male, age 74, both hemispheres 613.1
Ventral medullary reticular nucleus
nTPM: 1228.2
2372 Male, age 61, both hemispheres 1426.6
2060 Male, age 76, both hemispheres 1029.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 993.1
2180 Male, age 61, both hemispheres 1224.5
2118 Male, age 80, both hemispheres 1198.1
2741 Female, age 85, both hemispheres 949.6
1986 Male, age 76, both hemispheres 801.1
2302 Female, age 91, both hemispheres 792.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1516.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1516.6
FF:10038-101F2 18-64 years, mixed 1914.2
FF:10174-103C3 60 years, female 1388.7
FF:10155-103A2 76 years, female 1246.8

MEDULLA OBLONGATA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

642.2
Macaque sample Sample description nTPM
Medulla oblongata
nTPM: 642.2
Samples: 1

Max nTPM: 642.2
Min nTPM: 642.2
Sample A 642.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1240.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1240.9
Samples: 4

Max nTPM: 1516.9
Min nTPM: 821.6
Sample A Female 1370.1
Sample B Female 821.6
Sample C Male 1255.2
Sample D Male 1516.9

MEDULLA OBLONGATA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

735.2
Mouse sample Sample description nTPM
Medulla oblongata
nTPM: 735.2
Samples: 4

Max nTPM: 854.7
Min nTPM: 672.7
Sample A 854.7
Sample B 672.7
Sample C 705.0
Sample D 708.4

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