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BETA
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  • TF
EVOLUTIONARY RETINA Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS
MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2256.7 nTPM
GTEx:2256.7 nTPM
FANTOM5:564.8 Scaled Tags Per Million
Macaque:2816.4 nTPM
Mouse:123.8 nTPM
Pig:110.1 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2256.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 2256.7
Samples: 105

Max nTPM: 4394.2
Min nTPM: 700.0
Std nTPM: 679.1
Median nTPM:
137_1 83 years, male 4394.2
506_1 65 years, male 3861.8
264_1 73 years, female 3720.8
376_1 75 years, female 3573.8
177_1 74 years, male 3497.7
163_1 78 years, male 3455.9
452_1 88 years, female 3359.4
173_1 67 years, male 3180.2
295_1 61 years, female 3175.0
394_1 75 years, female 3044.3
351_1 91 years, male 3010.5
384_1 83 years, male 2983.6
379_1 60 years, male 2960.7
18_1 88 years, male 2950.1
189_1 76 years, male 2904.8
322_1 76 years, male 2904.1
17_1 71 years, male 2898.7
4_1 88 years, female 2879.1
386_1 76 years, male 2863.1
99_1 64 years, male 2862.6
317_1 60 years, male 2844.4
145_1 84 years, male 2831.0
406_1 79 years, male 2815.5
308_1 70 years, female 2802.7
243_1 75 years, male 2767.2
396_1 62 years, male 2766.1
115_1 83 years, male 2749.4
389_1 86 years, female 2748.3
503_1 68 years, male 2745.1
288_1 66 years, female 2744.7
237_1 82 years, male 2721.3
447_1 81 years, male 2653.0
377_1 82 years, female 2600.1
353_1 82 years, female 2573.9
356_1 87 years, female 2559.5
319_1 81 years, male 2548.3
349_1 83 years, male 2530.0
404_1 82 years, female 2432.1
172_1 72 years, female 2401.6
518_1 75 years, female 2397.3
375_1 74 years, female 2377.2
316_1 62 years, male 2350.2
480_1 63 years, male 2306.1
348_1 84 years, male 2291.4
347_1 72 years, male 2290.3
218_1 71 years, female 2267.0
314_1 67 years, male 2263.1
315_1 62 years, female 2248.3
126_1 63 years, male 2224.8
354_1 81 years, female 2199.4
320_1 89 years, female 2196.7
142_1 61 years, female 2185.0
526_1 61 years, male 2181.7
41_1 94 years, female 2175.4
109_1 81 years, female 2157.8
501_1 88 years, male 2153.2
120_1 70 years, female 2149.7
321_1 62 years, female 2145.7
335_1 73 years, female 2127.1
405_1 91 years, male 2113.6
425_1 59 years, female 2105.5
313_1 79 years, female 2086.1
6_1 73 years, female 2047.3
251_1 78 years, male 2029.9
254_1 77 years, female 2024.5
42_1 85 years, male 2020.7
350_1 84 years, female 1982.1
318_1 68 years, male 1980.6
35_1 74 years, female 1974.5
246_1 77 years, male 1966.7
291_1 76 years, male 1965.7
117_1 61 years, male 1957.7
9_1 66 years, female 1955.7
265_1 87 years, male 1951.2
217_1 76 years, male 1940.7
286_1 68 years, female 1938.1
266_1 85 years, male 1925.5
293_1 68 years, female 1914.0
292_1 71 years, male 1896.1
352_1 62 years, male 1871.7
229_1 69 years, female 1865.9
355_1 70 years, female 1832.6
307_1 66 years, female 1824.9
517_1 88 years, male 1820.3
468_1 89 years, male 1807.8
311_1 78 years, male 1786.9
81_1 67 years, male 1765.2
119_1 70 years, female 1748.5
324_1 76 years, male 1694.2
162_1 79 years, female 1603.3
2_1 77 years, female 1555.2
139_1 64 years, female 1440.7
495_1 57 years, female 1420.4
153_1 70 years, female 1346.1
89_1 63 years, male 1340.5
414_1 84 years, female 1295.1
499_1 55 years, female 1277.0
43_1 64 years, female 1233.4
32_1 67 years, male 1216.5
149_1 88 years, male 1164.6
415_1 77 years, female 966.6
413_1 59 years, female 904.7
466_1 57 years, female 898.3
491_1 89 years, female 795.6
490_1 67 years, female 700.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

564.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 564.8
FF:10030-101E3 24-65 years, mixed 564.8

RETINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2816.4
Macaque sample Sample description nTPM
Retina
nTPM: 2816.4
Samples: 2

Max nTPM: 3723.2
Min nTPM: 1909.6
Sample A 1909.6
Sample B 3723.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.1
Pig sample Sample description nTPM
Retina
nTPM: 110.1
Samples: 4

Max nTPM: 155.2
Min nTPM: 66.7
Sample A Female 91.1
Sample B Female 127.5
Sample C Male 155.2
Sample D Male 66.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.8
Mouse sample Sample description nTPM
Retina
nTPM: 123.8
Samples: 3

Max nTPM: 132.8
Min nTPM: 110.8
Sample D 132.8
Sample B 110.8
Sample C 127.9

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