A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
400.9
nTPM
Monaco:
333.1
nTPM
Schmiedel:
280.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
400.9
HPA sample
nTPM
Memory B-cell nTPM: 400.9
Samples: 6
Max nTPM: 492.4
Min nTPM: 323.2
P10809_1017
323.2
P10809_1025
415.1
P10809_1044
492.4
P10809_1063
334.8
P10809_1092
410.5
P10809_1105
429.3
Naive B-cell nTPM: 371.9
Samples: 6
Max nTPM: 612.1
Min nTPM: 207.6
P10809_1011
207.6
P10809_1029
343.8
P10809_1048
612.1
P10809_1067
323.4
P10809_1091
343.9
P10809_1104
400.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
333.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 231.4
Samples: 4
Max nTPM: 342.2
Min nTPM: 116.2
RHH5310_R3677
271.2
RHH5218_R3590
195.9
RHH5247_R3619
342.2
RHH5276_R3648
116.2
Naive B-cell nTPM: 224.0
Samples: 4
Max nTPM: 294.4
Min nTPM: 155.1
RHH5308_R3675
294.4
RHH5216_R3588
289.3
RHH5245_R3617
157.2
RHH5274_R3646
155.1
Non-switched memory B-cell nTPM: 232.2
Samples: 4
Max nTPM: 282.9
Min nTPM: 147.5
RHH5309_R3676
258.1
RHH5217_R3589
282.9
RHH5246_R3618
240.4
RHH5275_R3647
147.5
Plasmablast nTPM: 333.1
Samples: 4
Max nTPM: 346.4
Min nTPM: 320.3
RHH5312_R3679
325.5
RHH5220_R3592
346.4
RHH5249_R3621
340.2
RHH5278_R3650
320.3
Switched memory B-cell nTPM: 255.8
Samples: 4
Max nTPM: 362.7
Min nTPM: 147.9
RHH5311_R3678
362.7
RHH5219_R3591
331.9
RHH5248_R3620
180.6
RHH5277_R3649
147.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
280.0
Schmiedel sample id
TPM
Naive B-cell TPM: 280.0
Samples: 91
Max TPM: 412.0
Min TPM: 134.3
B_CELL_NAIVE_1
412.0
B_CELL_NAIVE_2
394.7
B_CELL_NAIVE_3
377.5
B_CELL_NAIVE_4
337.6
B_CELL_NAIVE_5
337.5
B_CELL_NAIVE_6
336.6
B_CELL_NAIVE_7
329.0
B_CELL_NAIVE_8
327.3
B_CELL_NAIVE_9
326.1
B_CELL_NAIVE_10
325.7
B_CELL_NAIVE_11
324.7
B_CELL_NAIVE_12
321.1
B_CELL_NAIVE_13
320.6
B_CELL_NAIVE_14
320.3
B_CELL_NAIVE_15
319.2
B_CELL_NAIVE_16
313.2
B_CELL_NAIVE_17
310.7
B_CELL_NAIVE_18
309.4
B_CELL_NAIVE_19
305.1
B_CELL_NAIVE_20
304.3
B_CELL_NAIVE_21
302.9
B_CELL_NAIVE_22
302.7
B_CELL_NAIVE_23
302.3
B_CELL_NAIVE_24
302.1
B_CELL_NAIVE_25
299.3
B_CELL_NAIVE_26
298.8
B_CELL_NAIVE_27
295.4
B_CELL_NAIVE_28
293.7
B_CELL_NAIVE_29
293.3
B_CELL_NAIVE_30
292.5
B_CELL_NAIVE_31
292.3
B_CELL_NAIVE_32
290.7
B_CELL_NAIVE_33
289.2
B_CELL_NAIVE_34
288.5
B_CELL_NAIVE_35
287.8
B_CELL_NAIVE_36
287.4
B_CELL_NAIVE_37
286.5
B_CELL_NAIVE_38
286.2
B_CELL_NAIVE_39
284.9
B_CELL_NAIVE_40
284.2
B_CELL_NAIVE_41
283.6
B_CELL_NAIVE_42
283.0
B_CELL_NAIVE_43
282.5
B_CELL_NAIVE_44
282.4
B_CELL_NAIVE_45
282.2
B_CELL_NAIVE_46
282.1
B_CELL_NAIVE_47
281.7
B_CELL_NAIVE_48
281.3
B_CELL_NAIVE_49
281.0
B_CELL_NAIVE_50
279.9
B_CELL_NAIVE_51
278.5
B_CELL_NAIVE_52
278.3
B_CELL_NAIVE_53
278.1
B_CELL_NAIVE_54
278.0
B_CELL_NAIVE_55
275.7
B_CELL_NAIVE_56
273.5
B_CELL_NAIVE_57
273.2
B_CELL_NAIVE_58
272.8
B_CELL_NAIVE_59
272.6
B_CELL_NAIVE_60
271.7
B_CELL_NAIVE_61
267.4
B_CELL_NAIVE_62
266.1
B_CELL_NAIVE_63
265.8
B_CELL_NAIVE_64
265.3
B_CELL_NAIVE_65
260.0
B_CELL_NAIVE_66
258.8
B_CELL_NAIVE_67
258.4
B_CELL_NAIVE_68
258.1
B_CELL_NAIVE_69
258.1
B_CELL_NAIVE_70
257.7
B_CELL_NAIVE_71
256.9
B_CELL_NAIVE_72
256.6
B_CELL_NAIVE_73
256.3
B_CELL_NAIVE_74
254.4
B_CELL_NAIVE_75
250.2
B_CELL_NAIVE_76
248.4
B_CELL_NAIVE_77
247.9
B_CELL_NAIVE_78
246.7
B_CELL_NAIVE_79
245.6
B_CELL_NAIVE_80
245.2
B_CELL_NAIVE_81
239.3
B_CELL_NAIVE_82
236.2
B_CELL_NAIVE_83
234.4
B_CELL_NAIVE_84
229.3
B_CELL_NAIVE_85
227.2
B_CELL_NAIVE_86
208.1
B_CELL_NAIVE_87
206.5
B_CELL_NAIVE_88
205.6
B_CELL_NAIVE_89
177.3
B_CELL_NAIVE_90
171.0
B_CELL_NAIVE_91
134.3
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