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BETA
  • SUMMARY

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  • BRAIN

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  • PSME1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:400.9 nTPM
Monaco:333.1 nTPM
Schmiedel:280.0 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

400.9
HPA sample nTPM
Memory B-cell
nTPM: 400.9
Samples: 6

Max nTPM: 492.4
Min nTPM: 323.2
P10809_1017 323.2
P10809_1025 415.1
P10809_1044 492.4
P10809_1063 334.8
P10809_1092 410.5
P10809_1105 429.3
Naive B-cell
nTPM: 371.9
Samples: 6

Max nTPM: 612.1
Min nTPM: 207.6
P10809_1011 207.6
P10809_1029 343.8
P10809_1048 612.1
P10809_1067 323.4
P10809_1091 343.9
P10809_1104 400.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

333.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 231.4
Samples: 4

Max nTPM: 342.2
Min nTPM: 116.2
RHH5310_R3677 271.2
RHH5218_R3590 195.9
RHH5247_R3619 342.2
RHH5276_R3648 116.2
Naive B-cell
nTPM: 224.0
Samples: 4

Max nTPM: 294.4
Min nTPM: 155.1
RHH5308_R3675 294.4
RHH5216_R3588 289.3
RHH5245_R3617 157.2
RHH5274_R3646 155.1
Non-switched memory B-cell
nTPM: 232.2
Samples: 4

Max nTPM: 282.9
Min nTPM: 147.5
RHH5309_R3676 258.1
RHH5217_R3589 282.9
RHH5246_R3618 240.4
RHH5275_R3647 147.5
Plasmablast
nTPM: 333.1
Samples: 4

Max nTPM: 346.4
Min nTPM: 320.3
RHH5312_R3679 325.5
RHH5220_R3592 346.4
RHH5249_R3621 340.2
RHH5278_R3650 320.3
Switched memory B-cell
nTPM: 255.8
Samples: 4

Max nTPM: 362.7
Min nTPM: 147.9
RHH5311_R3678 362.7
RHH5219_R3591 331.9
RHH5248_R3620 180.6
RHH5277_R3649 147.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

280.0
Schmiedel sample id TPM
Naive B-cell
TPM: 280.0
Samples: 91

Max TPM: 412.0
Min TPM: 134.3
B_CELL_NAIVE_1 412.0
B_CELL_NAIVE_2 394.7
B_CELL_NAIVE_3 377.5
B_CELL_NAIVE_4 337.6
B_CELL_NAIVE_5 337.5
B_CELL_NAIVE_6 336.6
B_CELL_NAIVE_7 329.0
B_CELL_NAIVE_8 327.3
B_CELL_NAIVE_9 326.1
B_CELL_NAIVE_10 325.7
B_CELL_NAIVE_11 324.7
B_CELL_NAIVE_12 321.1
B_CELL_NAIVE_13 320.6
B_CELL_NAIVE_14 320.3
B_CELL_NAIVE_15 319.2
B_CELL_NAIVE_16 313.2
B_CELL_NAIVE_17 310.7
B_CELL_NAIVE_18 309.4
B_CELL_NAIVE_19 305.1
B_CELL_NAIVE_20 304.3
B_CELL_NAIVE_21 302.9
B_CELL_NAIVE_22 302.7
B_CELL_NAIVE_23 302.3
B_CELL_NAIVE_24 302.1
B_CELL_NAIVE_25 299.3
B_CELL_NAIVE_26 298.8
B_CELL_NAIVE_27 295.4
B_CELL_NAIVE_28 293.7
B_CELL_NAIVE_29 293.3
B_CELL_NAIVE_30 292.5
B_CELL_NAIVE_31 292.3
B_CELL_NAIVE_32 290.7
B_CELL_NAIVE_33 289.2
B_CELL_NAIVE_34 288.5
B_CELL_NAIVE_35 287.8
B_CELL_NAIVE_36 287.4
B_CELL_NAIVE_37 286.5
B_CELL_NAIVE_38 286.2
B_CELL_NAIVE_39 284.9
B_CELL_NAIVE_40 284.2
B_CELL_NAIVE_41 283.6
B_CELL_NAIVE_42 283.0
B_CELL_NAIVE_43 282.5
B_CELL_NAIVE_44 282.4
B_CELL_NAIVE_45 282.2
B_CELL_NAIVE_46 282.1
B_CELL_NAIVE_47 281.7
B_CELL_NAIVE_48 281.3
B_CELL_NAIVE_49 281.0
B_CELL_NAIVE_50 279.9
B_CELL_NAIVE_51 278.5
B_CELL_NAIVE_52 278.3
B_CELL_NAIVE_53 278.1
B_CELL_NAIVE_54 278.0
B_CELL_NAIVE_55 275.7
B_CELL_NAIVE_56 273.5
B_CELL_NAIVE_57 273.2
B_CELL_NAIVE_58 272.8
B_CELL_NAIVE_59 272.6
B_CELL_NAIVE_60 271.7
B_CELL_NAIVE_61 267.4
B_CELL_NAIVE_62 266.1
B_CELL_NAIVE_63 265.8
B_CELL_NAIVE_64 265.3
B_CELL_NAIVE_65 260.0
B_CELL_NAIVE_66 258.8
B_CELL_NAIVE_67 258.4
B_CELL_NAIVE_68 258.1
B_CELL_NAIVE_69 258.1
B_CELL_NAIVE_70 257.7
B_CELL_NAIVE_71 256.9
B_CELL_NAIVE_72 256.6
B_CELL_NAIVE_73 256.3
B_CELL_NAIVE_74 254.4
B_CELL_NAIVE_75 250.2
B_CELL_NAIVE_76 248.4
B_CELL_NAIVE_77 247.9
B_CELL_NAIVE_78 246.7
B_CELL_NAIVE_79 245.6
B_CELL_NAIVE_80 245.2
B_CELL_NAIVE_81 239.3
B_CELL_NAIVE_82 236.2
B_CELL_NAIVE_83 234.4
B_CELL_NAIVE_84 229.3
B_CELL_NAIVE_85 227.2
B_CELL_NAIVE_86 208.1
B_CELL_NAIVE_87 206.5
B_CELL_NAIVE_88 205.6
B_CELL_NAIVE_89 177.3
B_CELL_NAIVE_90 171.0
B_CELL_NAIVE_91 134.3
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