A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
577.8
nTPM
Monaco:
389.0
nTPM
Schmiedel:
520.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
577.8
HPA sample
nTPM
Classical monocyte nTPM: 442.8
Samples: 6
Max nTPM: 520.0
Min nTPM: 332.0
P10809_1003
505.5
P10809_1020
436.8
P10809_1039
520.0
P10809_1058
332.0
P10809_1080
423.2
P10809_1107
439.4
Intermediate monocyte nTPM: 570.9
Samples: 6
Max nTPM: 676.4
Min nTPM: 425.0
P10809_1004
431.7
P10809_1023
663.5
P10809_1042
676.4
P10809_1061
425.0
P10809_1081
569.7
P10809_1108
658.8
Non-classical monocyte nTPM: 577.8
Samples: 5
Max nTPM: 724.2
Min nTPM: 467.4
P10809_1005
482.1
P10809_1053
643.3
P10809_1072
571.8
P10809_1082
467.4
P10809_1109
724.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
389.0
Monaco sample
nTPM
Classical monocyte nTPM: 296.0
Samples: 4
Max nTPM: 337.6
Min nTPM: 266.0
RHH5313_R3680
266.0
RHH5221_R3593
274.9
RHH5250_R3622
305.7
RHH5279_R3651
337.6
Intermediate monocyte nTPM: 389.0
Samples: 4
Max nTPM: 459.0
Min nTPM: 282.8
RHH5314_R3681
459.0
RHH5222_R3594
385.2
RHH5251_R3623
282.8
RHH5280_R3652
429.0
Non-classical monocyte nTPM: 264.6
Samples: 4
Max nTPM: 323.5
Min nTPM: 215.0
RHH5315_R3682
280.8
RHH5223_R3595
239.0
RHH5252_R3624
215.0
RHH5281_R3653
323.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
520.4
Schmiedel sample id
TPM
Classical monocyte TPM: 410.9
Samples: 91
Max TPM: 556.9
Min TPM: 315.3
MONOCYTES_1
556.9
MONOCYTES_2
538.0
MONOCYTES_3
534.8
MONOCYTES_4
529.6
MONOCYTES_5
529.4
MONOCYTES_6
502.4
MONOCYTES_7
493.0
MONOCYTES_8
486.5
MONOCYTES_9
484.2
MONOCYTES_10
483.5
MONOCYTES_11
476.3
MONOCYTES_12
475.3
MONOCYTES_13
466.4
MONOCYTES_14
459.9
MONOCYTES_15
458.6
MONOCYTES_16
457.4
MONOCYTES_17
455.8
MONOCYTES_18
449.4
MONOCYTES_19
448.3
MONOCYTES_20
446.4
MONOCYTES_21
443.0
MONOCYTES_22
438.4
MONOCYTES_23
434.9
MONOCYTES_24
434.8
MONOCYTES_25
433.1
MONOCYTES_26
430.4
MONOCYTES_27
428.2
MONOCYTES_28
427.2
MONOCYTES_29
426.4
MONOCYTES_30
422.3
MONOCYTES_31
422.0
MONOCYTES_32
418.6
MONOCYTES_33
417.7
MONOCYTES_34
415.1
MONOCYTES_35
413.3
MONOCYTES_36
413.2
MONOCYTES_37
412.8
MONOCYTES_38
412.0
MONOCYTES_39
411.5
MONOCYTES_40
407.4
MONOCYTES_41
406.6
MONOCYTES_42
404.2
MONOCYTES_43
402.4
MONOCYTES_44
402.3
MONOCYTES_45
400.6
MONOCYTES_46
400.1
MONOCYTES_47
399.8
MONOCYTES_48
398.9
MONOCYTES_49
396.4
MONOCYTES_50
396.0
MONOCYTES_51
395.1
MONOCYTES_52
394.8
MONOCYTES_53
394.4
MONOCYTES_54
393.9
MONOCYTES_55
392.0
MONOCYTES_56
391.4
MONOCYTES_57
390.7
MONOCYTES_58
390.6
MONOCYTES_59
390.0
MONOCYTES_60
387.7
MONOCYTES_61
387.4
MONOCYTES_62
387.1
MONOCYTES_63
387.0
MONOCYTES_64
386.9
MONOCYTES_65
386.7
MONOCYTES_66
386.2
MONOCYTES_67
385.3
MONOCYTES_68
383.1
MONOCYTES_69
383.1
MONOCYTES_70
382.7
MONOCYTES_71
378.0
MONOCYTES_72
375.9
MONOCYTES_73
372.9
MONOCYTES_74
369.3
MONOCYTES_75
369.2
MONOCYTES_76
366.7
MONOCYTES_77
366.0
MONOCYTES_78
359.3
MONOCYTES_79
356.7
MONOCYTES_80
355.7
MONOCYTES_81
355.4
MONOCYTES_82
352.8
MONOCYTES_83
350.7
MONOCYTES_84
348.7
MONOCYTES_85
345.4
MONOCYTES_86
342.8
MONOCYTES_87
340.6
MONOCYTES_88
338.3
MONOCYTES_89
330.3
MONOCYTES_90
328.3
MONOCYTES_91
315.3
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Non-classical monocyte TPM: 520.4
Samples: 90
Max TPM: 704.6
Min TPM: 381.3
M2_1
704.6
M2_2
703.6
M2_3
688.3
M2_4
686.1
M2_5
655.8
M2_6
623.5
M2_7
608.8
M2_8
605.7
M2_9
579.9
M2_10
579.6
M2_11
579.4
M2_12
578.7
M2_13
575.0
M2_14
574.6
M2_15
573.1
M2_16
572.2
M2_17
567.6
M2_18
567.3
M2_19
565.6
M2_20
564.2
M2_21
561.2
M2_22
559.3
M2_23
558.4
M2_24
557.4
M2_25
552.2
M2_26
552.0
M2_27
551.6
M2_28
550.7
M2_29
547.6
M2_30
540.1
M2_31
539.3
M2_32
537.7
M2_33
537.5
M2_34
533.6
M2_35
528.3
M2_36
526.9
M2_37
525.4
M2_38
522.3
M2_39
521.6
M2_40
519.9
M2_41
519.8
M2_42
519.0
M2_43
516.2
M2_44
515.3
M2_45
512.0
M2_46
510.6
M2_47
510.5
M2_48
509.1
M2_49
508.7
M2_50
508.2
M2_51
508.2
M2_52
506.4
M2_53
505.5
M2_54
503.1
M2_55
503.1
M2_56
503.1
M2_57
503.0
M2_58
499.8
M2_59
499.4
M2_60
499.4
M2_61
497.1
M2_62
494.3
M2_63
492.7
M2_64
486.0
M2_65
485.9
M2_66
482.3
M2_67
481.2
M2_68
478.4
M2_69
473.8
M2_70
473.5
M2_71
471.5
M2_72
470.6
M2_73
468.3
M2_74
464.6
M2_75
464.2
M2_76
461.9
M2_77
460.2
M2_78
456.8
M2_79
453.9
M2_80
450.8
M2_81
448.4
M2_82
446.1
M2_83
446.0
M2_84
445.1
M2_85
427.9
M2_86
419.6
M2_87
410.8
M2_88
402.5
M2_89
399.4
M2_90
381.3
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