A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
38.4
nTPM
Monaco:
55.2
nTPM
Schmiedel:
117.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
HPA sample
nTPM
Memory B-cell nTPM: 28.9
Samples: 6
Max nTPM: 35.0
Min nTPM: 18.4
P10809_1017
18.4
P10809_1025
34.4
P10809_1044
33.6
P10809_1063
35.0
P10809_1092
32.6
P10809_1105
19.6
Naive B-cell nTPM: 38.4
Samples: 6
Max nTPM: 81.6
Min nTPM: 18.6
P10809_1011
18.6
P10809_1029
37.6
P10809_1048
81.6
P10809_1067
19.1
P10809_1091
37.4
P10809_1104
36.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 43.3
Samples: 4
Max nTPM: 73.4
Min nTPM: 23.5
RHH5310_R3677
73.4
RHH5218_R3590
41.9
RHH5247_R3619
34.2
RHH5276_R3648
23.5
Naive B-cell nTPM: 50.2
Samples: 4
Max nTPM: 69.7
Min nTPM: 31.3
RHH5308_R3675
69.7
RHH5216_R3588
52.2
RHH5245_R3617
31.3
RHH5274_R3646
47.7
Non-switched memory B-cell nTPM: 50.3
Samples: 4
Max nTPM: 85.4
Min nTPM: 22.7
RHH5309_R3676
85.4
RHH5217_R3589
42.0
RHH5246_R3618
51.0
RHH5275_R3647
22.7
Plasmablast nTPM: 43.3
Samples: 4
Max nTPM: 59.4
Min nTPM: 34.1
RHH5312_R3679
39.7
RHH5220_R3592
39.9
RHH5249_R3621
59.4
RHH5278_R3650
34.1
Switched memory B-cell nTPM: 55.2
Samples: 4
Max nTPM: 74.0
Min nTPM: 28.8
RHH5311_R3678
74.0
RHH5219_R3591
69.3
RHH5248_R3620
48.5
RHH5277_R3649
28.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.9
Schmiedel sample id
TPM
Naive B-cell TPM: 117.9
Samples: 91
Max TPM: 180.9
Min TPM: 62.9
B_CELL_NAIVE_1
180.9
B_CELL_NAIVE_2
155.1
B_CELL_NAIVE_3
152.3
B_CELL_NAIVE_4
149.5
B_CELL_NAIVE_5
146.5
B_CELL_NAIVE_6
145.6
B_CELL_NAIVE_7
145.3
B_CELL_NAIVE_8
143.5
B_CELL_NAIVE_9
143.3
B_CELL_NAIVE_10
140.5
B_CELL_NAIVE_11
139.7
B_CELL_NAIVE_12
139.6
B_CELL_NAIVE_13
139.4
B_CELL_NAIVE_14
139.3
B_CELL_NAIVE_15
138.4
B_CELL_NAIVE_16
138.2
B_CELL_NAIVE_17
137.6
B_CELL_NAIVE_18
137.6
B_CELL_NAIVE_19
134.1
B_CELL_NAIVE_20
134.1
B_CELL_NAIVE_21
133.3
B_CELL_NAIVE_22
133.3
B_CELL_NAIVE_23
132.6
B_CELL_NAIVE_24
131.6
B_CELL_NAIVE_25
131.5
B_CELL_NAIVE_26
130.2
B_CELL_NAIVE_27
129.8
B_CELL_NAIVE_28
128.0
B_CELL_NAIVE_29
127.5
B_CELL_NAIVE_30
126.9
B_CELL_NAIVE_31
123.8
B_CELL_NAIVE_32
122.8
B_CELL_NAIVE_33
122.1
B_CELL_NAIVE_34
122.0
B_CELL_NAIVE_35
122.0
B_CELL_NAIVE_36
121.7
B_CELL_NAIVE_37
121.5
B_CELL_NAIVE_38
120.9
B_CELL_NAIVE_39
119.7
B_CELL_NAIVE_40
119.4
B_CELL_NAIVE_41
118.9
B_CELL_NAIVE_42
118.7
B_CELL_NAIVE_43
118.4
B_CELL_NAIVE_44
118.2
B_CELL_NAIVE_45
118.2
B_CELL_NAIVE_46
117.4
B_CELL_NAIVE_47
117.2
B_CELL_NAIVE_48
117.0
B_CELL_NAIVE_49
116.7
B_CELL_NAIVE_50
116.1
B_CELL_NAIVE_51
115.8
B_CELL_NAIVE_52
115.6
B_CELL_NAIVE_53
115.6
B_CELL_NAIVE_54
115.4
B_CELL_NAIVE_55
115.1
B_CELL_NAIVE_56
114.0
B_CELL_NAIVE_57
113.0
B_CELL_NAIVE_58
112.1
B_CELL_NAIVE_59
110.8
B_CELL_NAIVE_60
110.8
B_CELL_NAIVE_61
110.5
B_CELL_NAIVE_62
110.2
B_CELL_NAIVE_63
109.6
B_CELL_NAIVE_64
109.3
B_CELL_NAIVE_65
108.5
B_CELL_NAIVE_66
107.7
B_CELL_NAIVE_67
107.5
B_CELL_NAIVE_68
105.8
B_CELL_NAIVE_69
105.7
B_CELL_NAIVE_70
102.1
B_CELL_NAIVE_71
101.6
B_CELL_NAIVE_72
101.2
B_CELL_NAIVE_73
100.9
B_CELL_NAIVE_74
100.4
B_CELL_NAIVE_75
98.9
B_CELL_NAIVE_76
97.7
B_CELL_NAIVE_77
97.3
B_CELL_NAIVE_78
97.2
B_CELL_NAIVE_79
96.9
B_CELL_NAIVE_80
96.7
B_CELL_NAIVE_81
96.4
B_CELL_NAIVE_82
93.0
B_CELL_NAIVE_83
92.9
B_CELL_NAIVE_84
92.9
B_CELL_NAIVE_85
90.8
B_CELL_NAIVE_86
87.6
B_CELL_NAIVE_87
87.4
B_CELL_NAIVE_88
85.8
B_CELL_NAIVE_89
81.1
B_CELL_NAIVE_90
75.8
B_CELL_NAIVE_91
62.9
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The Human Protein Atlas project is funded
