A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.3
nTPM
Monaco:
46.8
nTPM
Schmiedel:
48.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
HPA sample
nTPM
Classical monocyte nTPM: 29.3
Samples: 6
Max nTPM: 37.6
Min nTPM: 22.1
P10809_1003
26.9
P10809_1020
36.5
P10809_1039
37.6
P10809_1058
22.1
P10809_1080
28.1
P10809_1107
24.7
Intermediate monocyte nTPM: 28.0
Samples: 6
Max nTPM: 37.0
Min nTPM: 20.5
P10809_1004
20.5
P10809_1023
28.4
P10809_1042
25.0
P10809_1061
33.3
P10809_1081
24.0
P10809_1108
37.0
Non-classical monocyte nTPM: 23.5
Samples: 5
Max nTPM: 29.3
Min nTPM: 14.6
P10809_1005
18.0
P10809_1053
29.3
P10809_1072
27.1
P10809_1082
14.6
P10809_1109
28.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.8
Monaco sample
nTPM
Classical monocyte nTPM: 46.8
Samples: 4
Max nTPM: 68.0
Min nTPM: 27.9
RHH5313_R3680
46.0
RHH5221_R3593
27.9
RHH5250_R3622
45.3
RHH5279_R3651
68.0
Intermediate monocyte nTPM: 40.9
Samples: 4
Max nTPM: 57.8
Min nTPM: 22.0
RHH5314_R3681
44.4
RHH5222_R3594
22.0
RHH5251_R3623
39.5
RHH5280_R3652
57.8
Non-classical monocyte nTPM: 35.6
Samples: 4
Max nTPM: 42.8
Min nTPM: 22.0
RHH5315_R3682
37.5
RHH5223_R3595
22.0
RHH5252_R3624
40.1
RHH5281_R3653
42.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.6
Schmiedel sample id
TPM
Classical monocyte TPM: 48.6
Samples: 91
Max TPM: 69.9
Min TPM: 32.5
MONOCYTES_1
69.9
MONOCYTES_2
68.1
MONOCYTES_3
64.7
MONOCYTES_4
63.3
MONOCYTES_5
63.1
MONOCYTES_6
62.0
MONOCYTES_7
61.1
MONOCYTES_8
60.9
MONOCYTES_9
60.7
MONOCYTES_10
60.0
MONOCYTES_11
58.3
MONOCYTES_12
57.8
MONOCYTES_13
57.4
MONOCYTES_14
57.2
MONOCYTES_15
57.0
MONOCYTES_16
56.9
MONOCYTES_17
56.6
MONOCYTES_18
56.3
MONOCYTES_19
55.2
MONOCYTES_20
54.9
MONOCYTES_21
54.6
MONOCYTES_22
53.8
MONOCYTES_23
53.5
MONOCYTES_24
53.5
MONOCYTES_25
53.3
MONOCYTES_26
53.0
MONOCYTES_27
52.9
MONOCYTES_28
52.4
MONOCYTES_29
52.3
MONOCYTES_30
52.2
MONOCYTES_31
52.1
MONOCYTES_32
52.0
MONOCYTES_33
51.6
MONOCYTES_34
51.6
MONOCYTES_35
51.4
MONOCYTES_36
51.4
MONOCYTES_37
51.1
MONOCYTES_38
49.9
MONOCYTES_39
49.6
MONOCYTES_40
49.6
MONOCYTES_41
49.4
MONOCYTES_42
49.2
MONOCYTES_43
48.9
MONOCYTES_44
48.7
MONOCYTES_45
48.3
MONOCYTES_46
48.2
MONOCYTES_47
47.8
MONOCYTES_48
47.5
MONOCYTES_49
47.3
MONOCYTES_50
47.1
MONOCYTES_51
47.1
MONOCYTES_52
45.8
MONOCYTES_53
45.7
MONOCYTES_54
45.4
MONOCYTES_55
45.0
MONOCYTES_56
45.0
MONOCYTES_57
45.0
MONOCYTES_58
44.9
MONOCYTES_59
44.0
MONOCYTES_60
44.0
MONOCYTES_61
43.9
MONOCYTES_62
43.9
MONOCYTES_63
43.5
MONOCYTES_64
43.5
MONOCYTES_65
43.4
MONOCYTES_66
43.3
MONOCYTES_67
42.5
MONOCYTES_68
42.2
MONOCYTES_69
42.2
MONOCYTES_70
42.2
MONOCYTES_71
42.2
MONOCYTES_72
41.7
MONOCYTES_73
41.1
MONOCYTES_74
41.0
MONOCYTES_75
40.7
MONOCYTES_76
40.5
MONOCYTES_77
40.4
MONOCYTES_78
39.8
MONOCYTES_79
39.5
MONOCYTES_80
39.4
MONOCYTES_81
39.4
MONOCYTES_82
39.0
MONOCYTES_83
38.9
MONOCYTES_84
38.7
MONOCYTES_85
37.7
MONOCYTES_86
37.7
MONOCYTES_87
37.2
MONOCYTES_88
37.0
MONOCYTES_89
36.9
MONOCYTES_90
36.8
MONOCYTES_91
32.5
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Non-classical monocyte TPM: 41.7
Samples: 90
Max TPM: 53.9
Min TPM: 28.5
M2_1
53.9
M2_2
53.7
M2_3
53.2
M2_4
52.9
M2_5
52.7
M2_6
52.7
M2_7
52.0
M2_8
51.7
M2_9
50.3
M2_10
49.3
M2_11
48.3
M2_12
47.1
M2_13
47.0
M2_14
46.9
M2_15
46.9
M2_16
46.8
M2_17
46.5
M2_18
46.2
M2_19
46.2
M2_20
46.0
M2_21
45.8
M2_22
45.8
M2_23
45.7
M2_24
45.7
M2_25
45.3
M2_26
45.3
M2_27
45.1
M2_28
45.0
M2_29
45.0
M2_30
44.9
M2_31
44.6
M2_32
44.4
M2_33
44.3
M2_34
44.3
M2_35
44.2
M2_36
44.1
M2_37
44.0
M2_38
43.5
M2_39
43.4
M2_40
43.4
M2_41
42.8
M2_42
42.8
M2_43
42.7
M2_44
42.3
M2_45
42.2
M2_46
42.1
M2_47
41.6
M2_48
40.7
M2_49
40.6
M2_50
40.5
M2_51
40.2
M2_52
40.1
M2_53
40.1
M2_54
39.9
M2_55
39.8
M2_56
39.6
M2_57
39.6
M2_58
39.5
M2_59
39.5
M2_60
39.2
M2_61
38.8
M2_62
38.8
M2_63
38.7
M2_64
38.7
M2_65
38.3
M2_66
38.1
M2_67
37.7
M2_68
37.7
M2_69
37.4
M2_70
37.3
M2_71
36.5
M2_72
36.5
M2_73
36.4
M2_74
36.2
M2_75
36.2
M2_76
36.2
M2_77
34.4
M2_78
34.3
M2_79
34.2
M2_80
33.1
M2_81
32.9
M2_82
32.4
M2_83
31.9
M2_84
31.6
M2_85
31.5
M2_86
31.4
M2_87
31.4
M2_88
31.3
M2_89
30.3
M2_90
28.5
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