A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.9
nTPM
Monaco:
23.7
nTPM
Schmiedel:
73.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.9
HPA sample
nTPM
NK-cell nTPM: 20.9
Samples: 6
Max nTPM: 35.7
Min nTPM: 4.5
P10809_1013
11.0
P10809_1033
35.7
P10809_1052
17.3
P10809_1071
27.7
P10809_1093
4.5
P10809_1103
29.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.7
Monaco sample
nTPM
NK-cell nTPM: 23.7
Samples: 4
Max nTPM: 29.8
Min nTPM: 16.7
RHH5316_R3683
29.6
RHH5224_R3596
18.8
RHH5253_R3625
16.7
RHH5282_R3654
29.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.4
Schmiedel sample id
TPM
NK-cell TPM: 73.4
Samples: 90
Max TPM: 102.6
Min TPM: 51.9
NK_1
102.6
NK_2
96.6
NK_3
93.1
NK_4
92.7
NK_5
91.2
NK_6
91.0
NK_7
89.5
NK_8
88.5
NK_9
88.5
NK_10
87.8
NK_11
87.6
NK_12
86.6
NK_13
86.6
NK_14
84.6
NK_15
83.8
NK_16
83.4
NK_17
83.0
NK_18
82.5
NK_19
82.3
NK_20
82.0
NK_21
81.9
NK_22
81.4
NK_23
81.1
NK_24
81.0
NK_25
80.6
NK_26
80.4
NK_27
79.5
NK_28
79.2
NK_29
78.7
NK_30
78.4
NK_31
78.3
NK_32
77.6
NK_33
77.4
NK_34
77.0
NK_35
76.7
NK_36
76.6
NK_37
76.6
NK_38
76.1
NK_39
76.0
NK_40
75.3
NK_41
75.1
NK_42
75.1
NK_43
74.4
NK_44
74.1
NK_45
74.1
NK_46
73.2
NK_47
72.7
NK_48
72.6
NK_49
72.5
NK_50
72.4
NK_51
72.3
NK_52
71.7
NK_53
71.5
NK_54
70.9
NK_55
70.2
NK_56
70.0
NK_57
69.9
NK_58
69.4
NK_59
69.2
NK_60
69.1
NK_61
68.4
NK_62
68.3
NK_63
68.1
NK_64
66.8
NK_65
66.8
NK_66
66.8
NK_67
66.6
NK_68
66.0
NK_69
65.7
NK_70
64.9
NK_71
64.0
NK_72
63.5
NK_73
63.2
NK_74
61.3
NK_75
61.0
NK_76
60.2
NK_77
59.4
NK_78
58.4
NK_79
58.2
NK_80
58.2
NK_81
57.6
NK_82
57.4
NK_83
57.3
NK_84
56.3
NK_85
56.1
NK_86
55.0
NK_87
53.7
NK_88
53.7
NK_89
53.4
NK_90
51.9
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