MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.9 nTPM
HPA Brain:408.6 nTPM
GTEx:104.9 nTPM
FANTOM5:163.7 Scaled Tags Per Million
Pig:527.1 nTPM
Mouse:267.3 nTPM
Allen mouse:18.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 408.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 267.9
2411 Female, age 72, unknown 356.5
1827 Male, age 72, unknown 323.1
1870 Female, age 42, unknown 299.3
1833 Male, age 53, unknown 270.0
2219 Male, age 76, both hemispheres 267.1
2828 Female, age 72, unknown 250.1
2666 Male, age 74, left hemisphere 235.5
1830 Male, age 51, unknown 234.5
2586 Male, age 75, left hemisphere 225.4
2019 Male, age 18, unknown 217.1
Dorsal raphe nucleus
nTPM: 360.9
2298 Female, age 72, unknown 554.5
2047 Male, age 72, unknown 365.8
2750 Male, age 76, both hemispheres 311.9
1828 Male, age 53, unknown 286.7
2016 Female, age 72, unknown 285.3
Inferior colliculus
nTPM: 330.0
2097 Female, age 72, unknown 419.8
2849 Male, age 72, unknown 323.6
1848 Female, age 42, unknown 299.0
1890 Male, age 53, unknown 277.4
Median raphe nucleus
nTPM: 408.6
2220 Male, age 76, midline 408.6
Periaquaductal grey, anterior
nTPM: 377.6
1947 Male, age 18, unknown 411.0
1795 Male, age 51, unknown 385.4
2502 Female, age 75, unknown 336.5
Periaquaductal grey, dorsal
nTPM: 341.9
1840 Male, age 53, unknown 413.1
2850 Male, age 76, both hemispheres 364.3
2464 Female, age 72, unknown 306.1
1831 Male, age 72, unknown 284.1
Periaquaductal grey, lateral
nTPM: 338.9
2272 Male, age 74, both hemispheres 394.8
2140 Male, age 76, both hemispheres 333.5
2053 Male, age 18, unknown 288.5
Pretectal area
nTPM: 333.1
2224 Female, age 72, unknown 508.0
2273 Male, age 74, both hemispheres 490.7
2825 Male, age 18, unknown 370.4
2667 Female, age 75, unknown 360.6
2007 Male, age 72, unknown 305.0
1816 Male, age 51, unknown 297.4
1817 Female, age 42, unknown 280.7
1944 Female, age 72, unknown 266.1
2407 Male, age 75, both hemispheres 265.0
2316 Male, age 76, right hemisphere 262.5
1815 Male, age 53, unknown 257.4
Red nucleus
nTPM: 194.4
2725 Female, age 75, unknown 238.1
2785 Male, age 18, unknown 220.7
2227 Male, age 72, unknown 214.9
2769 Male, age 72, unknown 214.1
2503 Female, age 72, unknown 212.1
2584 Male, age 75, left hemisphere 202.5
1821 Female, age 72, unknown 198.0
1954 Female, age 42, unknown 181.1
1904 Male, age 53, unknown 175.7
2823 Male, age 76, right hemisphere 168.9
2588 Male, age 74, left hemisphere 154.8
1865 Male, age 51, unknown 151.9
Substantia nigra
nTPM: 226.1
1941 Male, age 53, unknown 280.2
1889 Female, age 72, unknown 276.5
1916 Female, age 42, unknown 271.5
1851 Male, age 51, unknown 256.4
2241 Male, age 72, unknown 226.5
2665 Male, age 74, both hemispheres 214.5
2583 Male, age 75, right hemisphere 202.5
2699 Male, age 18, unknown 199.0
2590 Female, age 75, unknown 187.2
2409 Female, age 72, unknown 146.4
Superior colliculus
nTPM: 275.1
1796 Male, age 53, unknown 339.6
1839 Male, age 51, unknown 324.0
2261 Male, age 18, unknown 300.3
2587 Male, age 74, left hemisphere 289.6
2664 Male, age 75, both hemispheres 281.8
1895 Male, age 76, right hemisphere 279.0
2668 Female, age 75, unknown 261.6
2087 Female, age 72, unknown 254.4
1995 Male, age 72, unknown 213.1
1913 Female, age 42, unknown 207.6
Ventral tegmental area
nTPM: 290.3
1942 Male, age 51, unknown 319.2
2218 Male, age 76, both hemispheres 303.9
1915 Female, age 42, unknown 302.2
2021 Male, age 53, unknown 290.0
2410 Female, age 72, unknown 275.8
2223 Female, age 72, unknown 250.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 104.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.9
Samples: 183

Max nTPM: 379.1
Min nTPM: 10.7
Std nTPM: 65.4
Median nTPM: 87.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 379.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 338.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 337.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 286.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 270.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 259.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 249.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 240.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 235.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 235.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 231.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 163.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.7
FF:10158-103A5 76 years, female 163.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 527.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 527.2
Samples: 4

Max nTPM: 735.3
Min nTPM: 328.8
Sample A Female 735.3
Sample B Female 384.1
Sample C Male 660.4
Sample D Male 328.8
Midbrain
nTPM: 507.1
Samples: 4

Max nTPM: 632.6
Min nTPM: 413.5
Sample A Female 466.0
Sample B Female 413.5
Sample C Male 516.1
Sample D Male 632.6
Periaqueductal gray
nTPM: 433.4
Samples: 3

Max nTPM: 523.1
Min nTPM: 380.8
Sample B Female 380.8
Sample C Male 523.1
Sample D Male 396.2
Superior colliculi
nTPM: 481.0
Samples: 4

Max nTPM: 653.4
Min nTPM: 352.9
Sample A Female 653.4
Sample B Female 352.9
Sample C Male 433.0
Sample D Male 484.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 267.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 267.3
Samples: 4

Max nTPM: 287.2
Min nTPM: 250.4
Sample A Male 287.2
Sample B Male 257.0
Sample C Female 250.4
Sample D Female 274.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.3
74635072 Antisense, RP_060215_03_C09, Mouse strain C57BL/6J (56 days, male) 18.3

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