A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.2
nTPM
Monaco:
210.0
nTPM
Schmiedel:
44.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.2
HPA sample
nTPM
Memory B-cell nTPM: 20.3
Samples: 6
Max nTPM: 26.7
Min nTPM: 14.0
P10809_1017
21.4
P10809_1025
26.7
P10809_1044
14.3
P10809_1063
14.0
P10809_1092
19.7
P10809_1105
25.4
Naive B-cell nTPM: 14.9
Samples: 6
Max nTPM: 25.6
Min nTPM: 8.5
P10809_1011
8.5
P10809_1029
15.6
P10809_1048
25.6
P10809_1067
11.5
P10809_1091
13.3
P10809_1104
14.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
210.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 39.6
Samples: 4
Max nTPM: 56.0
Min nTPM: 12.9
RHH5310_R3677
56.0
RHH5218_R3590
50.3
RHH5247_R3619
12.9
RHH5276_R3648
39.3
Naive B-cell nTPM: 24.3
Samples: 4
Max nTPM: 28.9
Min nTPM: 13.7
RHH5308_R3675
27.8
RHH5216_R3588
26.9
RHH5245_R3617
13.7
RHH5274_R3646
28.9
Non-switched memory B-cell nTPM: 38.4
Samples: 4
Max nTPM: 57.5
Min nTPM: 14.5
RHH5309_R3676
49.4
RHH5217_R3589
57.5
RHH5246_R3618
14.5
RHH5275_R3647
32.3
Plasmablast nTPM: 210.0
Samples: 4
Max nTPM: 222.7
Min nTPM: 200.9
RHH5312_R3679
222.7
RHH5220_R3592
210.5
RHH5249_R3621
200.9
RHH5278_R3650
206.0
Switched memory B-cell nTPM: 33.5
Samples: 4
Max nTPM: 49.0
Min nTPM: 23.4
RHH5311_R3678
25.0
RHH5219_R3591
49.0
RHH5248_R3620
36.4
RHH5277_R3649
23.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.0
Schmiedel sample id
TPM
Naive B-cell TPM: 44.0
Samples: 91
Max TPM: 66.8
Min TPM: 28.4
B_CELL_NAIVE_1
66.8
B_CELL_NAIVE_2
65.9
B_CELL_NAIVE_3
65.4
B_CELL_NAIVE_4
61.5
B_CELL_NAIVE_5
60.7
B_CELL_NAIVE_6
58.4
B_CELL_NAIVE_7
55.9
B_CELL_NAIVE_8
55.6
B_CELL_NAIVE_9
54.3
B_CELL_NAIVE_10
51.2
B_CELL_NAIVE_11
51.1
B_CELL_NAIVE_12
50.8
B_CELL_NAIVE_13
50.5
B_CELL_NAIVE_14
50.3
B_CELL_NAIVE_15
50.3
B_CELL_NAIVE_16
49.6
B_CELL_NAIVE_17
49.4
B_CELL_NAIVE_18
48.7
B_CELL_NAIVE_19
48.3
B_CELL_NAIVE_20
48.0
B_CELL_NAIVE_21
47.3
B_CELL_NAIVE_22
47.2
B_CELL_NAIVE_23
47.1
B_CELL_NAIVE_24
46.8
B_CELL_NAIVE_25
46.8
B_CELL_NAIVE_26
46.5
B_CELL_NAIVE_27
46.4
B_CELL_NAIVE_28
46.3
B_CELL_NAIVE_29
46.3
B_CELL_NAIVE_30
45.7
B_CELL_NAIVE_31
45.6
B_CELL_NAIVE_32
45.2
B_CELL_NAIVE_33
45.2
B_CELL_NAIVE_34
44.3
B_CELL_NAIVE_35
44.1
B_CELL_NAIVE_36
43.9
B_CELL_NAIVE_37
43.8
B_CELL_NAIVE_38
43.6
B_CELL_NAIVE_39
43.5
B_CELL_NAIVE_40
43.4
B_CELL_NAIVE_41
43.2
B_CELL_NAIVE_42
43.1
B_CELL_NAIVE_43
43.1
B_CELL_NAIVE_44
43.0
B_CELL_NAIVE_45
43.0
B_CELL_NAIVE_46
42.6
B_CELL_NAIVE_47
42.6
B_CELL_NAIVE_48
42.2
B_CELL_NAIVE_49
42.0
B_CELL_NAIVE_50
41.7
B_CELL_NAIVE_51
41.5
B_CELL_NAIVE_52
41.5
B_CELL_NAIVE_53
41.3
B_CELL_NAIVE_54
41.0
B_CELL_NAIVE_55
40.9
B_CELL_NAIVE_56
40.9
B_CELL_NAIVE_57
40.8
B_CELL_NAIVE_58
40.7
B_CELL_NAIVE_59
40.5
B_CELL_NAIVE_60
40.5
B_CELL_NAIVE_61
40.4
B_CELL_NAIVE_62
40.3
B_CELL_NAIVE_63
40.3
B_CELL_NAIVE_64
39.9
B_CELL_NAIVE_65
39.5
B_CELL_NAIVE_66
39.5
B_CELL_NAIVE_67
39.1
B_CELL_NAIVE_68
39.0
B_CELL_NAIVE_69
38.9
B_CELL_NAIVE_70
38.6
B_CELL_NAIVE_71
38.5
B_CELL_NAIVE_72
38.5
B_CELL_NAIVE_73
38.5
B_CELL_NAIVE_74
38.4
B_CELL_NAIVE_75
38.2
B_CELL_NAIVE_76
38.1
B_CELL_NAIVE_77
37.9
B_CELL_NAIVE_78
37.8
B_CELL_NAIVE_79
37.7
B_CELL_NAIVE_80
37.4
B_CELL_NAIVE_81
37.1
B_CELL_NAIVE_82
36.8
B_CELL_NAIVE_83
36.8
B_CELL_NAIVE_84
36.6
B_CELL_NAIVE_85
36.3
B_CELL_NAIVE_86
36.2
B_CELL_NAIVE_87
36.2
B_CELL_NAIVE_88
35.1
B_CELL_NAIVE_89
34.8
B_CELL_NAIVE_90
34.1
B_CELL_NAIVE_91
28.4
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