A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.9
nTPM
Monaco:
74.8
nTPM
Schmiedel:
54.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.9
HPA sample
nTPM
Classical monocyte nTPM: 17.2
Samples: 6
Max nTPM: 24.0
Min nTPM: 12.4
P10809_1003
13.2
P10809_1020
24.0
P10809_1039
22.0
P10809_1058
13.7
P10809_1080
18.0
P10809_1107
12.4
Intermediate monocyte nTPM: 23.2
Samples: 6
Max nTPM: 34.6
Min nTPM: 16.4
P10809_1004
20.7
P10809_1023
25.5
P10809_1042
19.9
P10809_1061
34.6
P10809_1081
16.4
P10809_1108
22.1
Non-classical monocyte nTPM: 27.9
Samples: 5
Max nTPM: 36.8
Min nTPM: 18.5
P10809_1005
29.1
P10809_1053
27.3
P10809_1072
36.8
P10809_1082
18.5
P10809_1109
27.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.8
Monaco sample
nTPM
Classical monocyte nTPM: 65.7
Samples: 4
Max nTPM: 102.7
Min nTPM: 47.8
RHH5313_R3680
62.3
RHH5221_R3593
102.7
RHH5250_R3622
47.8
RHH5279_R3651
49.9
Intermediate monocyte nTPM: 74.8
Samples: 4
Max nTPM: 112.9
Min nTPM: 57.4
RHH5314_R3681
57.4
RHH5222_R3594
112.9
RHH5251_R3623
57.4
RHH5280_R3652
71.5
Non-classical monocyte nTPM: 70.8
Samples: 4
Max nTPM: 88.4
Min nTPM: 47.3
RHH5315_R3682
78.4
RHH5223_R3595
88.4
RHH5252_R3624
69.0
RHH5281_R3653
47.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.9
Schmiedel sample id
TPM
Classical monocyte TPM: 31.3
Samples: 91
Max TPM: 41.1
Min TPM: 24.1
MONOCYTES_1
41.1
MONOCYTES_2
40.0
MONOCYTES_3
39.9
MONOCYTES_4
39.3
MONOCYTES_5
39.1
MONOCYTES_6
38.6
MONOCYTES_7
38.0
MONOCYTES_8
36.6
MONOCYTES_9
36.6
MONOCYTES_10
36.5
MONOCYTES_11
36.4
MONOCYTES_12
36.2
MONOCYTES_13
36.1
MONOCYTES_14
36.0
MONOCYTES_15
36.0
MONOCYTES_16
35.7
MONOCYTES_17
35.7
MONOCYTES_18
34.9
MONOCYTES_19
34.7
MONOCYTES_20
34.7
MONOCYTES_21
34.6
MONOCYTES_22
34.2
MONOCYTES_23
34.1
MONOCYTES_24
33.9
MONOCYTES_25
33.9
MONOCYTES_26
33.7
MONOCYTES_27
33.6
MONOCYTES_28
33.5
MONOCYTES_29
33.4
MONOCYTES_30
33.3
MONOCYTES_31
32.8
MONOCYTES_32
32.7
MONOCYTES_33
32.7
MONOCYTES_34
32.5
MONOCYTES_35
32.3
MONOCYTES_36
32.0
MONOCYTES_37
31.9
MONOCYTES_38
31.6
MONOCYTES_39
31.6
MONOCYTES_40
31.4
MONOCYTES_41
31.2
MONOCYTES_42
31.1
MONOCYTES_43
31.0
MONOCYTES_44
30.9
MONOCYTES_45
30.8
MONOCYTES_46
30.7
MONOCYTES_47
30.6
MONOCYTES_48
30.5
MONOCYTES_49
30.5
MONOCYTES_50
30.3
MONOCYTES_51
30.0
MONOCYTES_52
30.0
MONOCYTES_53
29.9
MONOCYTES_54
29.9
MONOCYTES_55
29.8
MONOCYTES_56
29.5
MONOCYTES_57
29.4
MONOCYTES_58
29.3
MONOCYTES_59
29.2
MONOCYTES_60
29.1
MONOCYTES_61
29.0
MONOCYTES_62
29.0
MONOCYTES_63
28.7
MONOCYTES_64
28.7
MONOCYTES_65
28.6
MONOCYTES_66
28.6
MONOCYTES_67
28.6
MONOCYTES_68
28.4
MONOCYTES_69
28.4
MONOCYTES_70
28.3
MONOCYTES_71
28.0
MONOCYTES_72
27.7
MONOCYTES_73
27.3
MONOCYTES_74
27.2
MONOCYTES_75
27.1
MONOCYTES_76
27.0
MONOCYTES_77
27.0
MONOCYTES_78
26.9
MONOCYTES_79
26.9
MONOCYTES_80
26.7
MONOCYTES_81
26.4
MONOCYTES_82
26.3
MONOCYTES_83
26.3
MONOCYTES_84
26.1
MONOCYTES_85
25.8
MONOCYTES_86
25.8
MONOCYTES_87
25.6
MONOCYTES_88
25.4
MONOCYTES_89
24.9
MONOCYTES_90
24.6
MONOCYTES_91
24.1
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Non-classical monocyte TPM: 54.9
Samples: 90
Max TPM: 84.7
Min TPM: 41.3
M2_1
84.7
M2_2
80.9
M2_3
76.2
M2_4
76.2
M2_5
73.3
M2_6
71.7
M2_7
70.8
M2_8
69.7
M2_9
69.0
M2_10
66.1
M2_11
65.5
M2_12
64.1
M2_13
63.8
M2_14
63.2
M2_15
61.2
M2_16
60.5
M2_17
60.4
M2_18
60.3
M2_19
60.2
M2_20
60.1
M2_21
59.9
M2_22
59.9
M2_23
59.4
M2_24
58.9
M2_25
58.7
M2_26
57.8
M2_27
57.7
M2_28
57.6
M2_29
57.5
M2_30
57.3
M2_31
56.9
M2_32
56.9
M2_33
56.9
M2_34
56.8
M2_35
56.7
M2_36
55.6
M2_37
55.6
M2_38
55.3
M2_39
55.3
M2_40
55.0
M2_41
54.9
M2_42
54.4
M2_43
54.2
M2_44
53.6
M2_45
53.5
M2_46
53.3
M2_47
53.3
M2_48
52.1
M2_49
51.7
M2_50
51.6
M2_51
51.5
M2_52
51.5
M2_53
51.4
M2_54
51.3
M2_55
50.9
M2_56
50.8
M2_57
50.5
M2_58
50.4
M2_59
50.0
M2_60
49.9
M2_61
49.8
M2_62
49.1
M2_63
49.1
M2_64
49.1
M2_65
49.0
M2_66
48.8
M2_67
48.5
M2_68
48.5
M2_69
48.2
M2_70
48.1
M2_71
48.0
M2_72
47.9
M2_73
47.7
M2_74
47.4
M2_75
47.2
M2_76
46.9
M2_77
46.9
M2_78
46.8
M2_79
46.5
M2_80
46.3
M2_81
46.1
M2_82
45.4
M2_83
44.9
M2_84
44.5
M2_85
43.7
M2_86
43.6
M2_87
43.0
M2_88
42.6
M2_89
41.5
M2_90
41.3
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