A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.2
nTPM
Monaco:
38.4
nTPM
Schmiedel:
34.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.2
HPA sample
nTPM
NK-cell nTPM: 23.2
Samples: 6
Max nTPM: 31.1
Min nTPM: 12.8
P10809_1013
22.9
P10809_1033
22.6
P10809_1052
12.8
P10809_1071
31.1
P10809_1093
23.0
P10809_1103
26.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
Monaco sample
nTPM
NK-cell nTPM: 38.4
Samples: 4
Max nTPM: 52.8
Min nTPM: 28.5
RHH5316_R3683
43.4
RHH5224_R3596
28.9
RHH5253_R3625
28.5
RHH5282_R3654
52.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.5
Schmiedel sample id
TPM
NK-cell TPM: 34.5
Samples: 90
Max TPM: 56.7
Min TPM: 19.1
NK_1
56.7
NK_2
55.9
NK_3
50.0
NK_4
49.0
NK_5
48.7
NK_6
47.0
NK_7
44.2
NK_8
44.1
NK_9
43.1
NK_10
41.9
NK_11
41.3
NK_12
41.2
NK_13
41.0
NK_14
40.9
NK_15
40.6
NK_16
39.6
NK_17
39.6
NK_18
39.3
NK_19
39.1
NK_20
38.7
NK_21
38.4
NK_22
38.2
NK_23
38.2
NK_24
38.2
NK_25
37.7
NK_26
37.6
NK_27
37.6
NK_28
37.6
NK_29
37.5
NK_30
37.4
NK_31
36.9
NK_32
36.8
NK_33
36.7
NK_34
36.7
NK_35
36.7
NK_36
36.6
NK_37
36.4
NK_38
36.3
NK_39
36.0
NK_40
35.8
NK_41
35.7
NK_42
35.0
NK_43
34.5
NK_44
34.4
NK_45
34.3
NK_46
34.0
NK_47
33.9
NK_48
33.9
NK_49
33.7
NK_50
33.6
NK_51
33.2
NK_52
32.7
NK_53
32.6
NK_54
32.5
NK_55
32.3
NK_56
32.3
NK_57
31.8
NK_58
31.6
NK_59
31.2
NK_60
31.1
NK_61
31.0
NK_62
30.7
NK_63
30.3
NK_64
30.3
NK_65
30.1
NK_66
30.1
NK_67
29.8
NK_68
29.7
NK_69
29.4
NK_70
29.1
NK_71
29.1
NK_72
29.1
NK_73
28.6
NK_74
28.4
NK_75
27.6
NK_76
26.9
NK_77
26.9
NK_78
26.7
NK_79
26.4
NK_80
26.1
NK_81
25.8
NK_82
25.8
NK_83
25.2
NK_84
24.4
NK_85
24.0
NK_86
23.8
NK_87
23.5
NK_88
23.3
NK_89
22.7
NK_90
19.1
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