We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HNRNPC
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • HNRNPC
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:318.9 nTPM
HPA Brain:313.3 nTPM
GTEx:318.9 nTPM
FANTOM5:17.8 Scaled Tags Per Million
Pig:310.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 274.1
1981 Female, age 72, midline 325.7
2565 Male, age 75, midline 285.7
2048 Male, age 55, midline 284.9
2194 Female, age 79, both hemispheres 238.9
2816 Male, age 47, midline 235.2
Cervical spinal cord, dorsal horn
nTPM: 308.2
2296 Male, age 66, both hemispheres 356.1
2069 Male, age 47, both hemispheres 350.5
2173 Female, age 72, unknown 339.5
2297 Male, age 75, both hemispheres 280.7
1877 Male, age 55, unknown 276.5
2721 Male, age 90, both hemispheres 245.9
Cervical spinal cord, ventral horn
nTPM: 313.3
2480 Male, age 75, both hemispheres 374.5
2098 Female, age 72, unknown 368.2
2809 Male, age 90, both hemispheres 347.4
2295 Male, age 66, both hemispheres 319.8
2068 Male, age 55, unknown 266.5
2820 Female, age 79, both hemispheres 203.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

318.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 318.9
Samples: 204

Max nTPM: 493.3
Min nTPM: 188.2
Std nTPM: 51.5
Median nTPM: 320.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 493.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 459.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 434.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 433.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 429.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 426.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 424.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 418.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 410.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 410.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 403.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 402.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 400.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 386.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 386.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 385.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 382.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 381.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 380.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 380.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 379.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 377.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 376.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 374.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 374.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 372.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 370.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 369.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 368.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 368.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 367.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 367.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 367.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 366.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 364.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 364.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 363.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 362.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 359.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 359.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 359.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 358.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 357.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 357.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 357.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 356.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 355.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 354.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 354.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 353.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 352.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 352.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 351.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 349.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 349.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 348.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 348.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 348.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 348.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 346.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 345.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 345.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 345.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 345.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 345.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 344.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 343.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 342.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 342.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 341.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 341.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 339.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 339.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 336.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 336.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 335.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 334.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 334.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 333.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 333.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 333.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 333.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 331.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 331.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 330.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 330.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 329.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 329.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 328.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 328.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 327.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 327.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 327.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 327.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 326.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 326.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 326.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 326.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 325.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 324.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 321.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 321.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 320.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 317.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 317.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 317.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 316.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 315.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 315.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 314.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 313.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 311.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 311.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 311.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 310.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 309.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 309.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 308.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 308.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 308.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 308.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 306.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 305.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 305.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 304.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 303.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 302.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 302.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 302.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 301.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 301.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 300.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 300.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 300.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 297.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 297.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 296.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 294.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 293.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 292.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 292.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 292.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 292.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 291.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 291.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 290.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 290.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 290.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 289.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 288.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 286.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 286.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 286.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 285.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 284.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 283.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 282.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 282.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 280.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 279.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 279.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 278.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 278.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 276.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 275.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 274.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 272.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 272.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 271.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 270.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 268.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 267.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 266.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 263.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 262.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 261.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 261.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 260.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 259.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 257.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 256.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 255.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 254.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 253.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 252.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 252.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 251.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 250.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 248.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 246.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 246.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 243.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 243.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 240.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 230.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 229.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 214.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 214.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 208.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 205.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 205.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 198.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 197.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 188.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 17.8
FF:10181-103D1 60 years, female 22.6
FF:10159-103A6 76 years, female 13.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

310.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 288.5
Samples: 4

Max nTPM: 320.2
Min nTPM: 246.2
Sample A Female 273.7
Sample B Female 320.2
Sample C Male 314.0
Sample D Male 246.2
Ventral spinal cord
nTPM: 311.0
Samples: 4

Max nTPM: 331.4
Min nTPM: 296.1
Sample A Female 302.2
Sample B Female 314.1
Sample C Male 296.1
Sample D Male 331.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo