MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:294.0 nTPM
HPA Brain:266.5 nTPM
GTEx:294.0 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:288.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 266.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 245.4
1870 Female, age 42, unknown 266.3
1833 Male, age 53, unknown 264.6
1827 Male, age 72, unknown 263.1
2019 Male, age 18, unknown 259.8
1830 Male, age 51, unknown 256.7
2666 Male, age 74, left hemisphere 254.8
2411 Female, age 72, unknown 253.3
2828 Female, age 72, unknown 242.7
2219 Male, age 76, both hemispheres 208.8
2586 Male, age 75, left hemisphere 183.6
Dorsal raphe nucleus
nTPM: 255.2
2298 Female, age 72, unknown 283.8
2016 Female, age 72, unknown 263.8
2750 Male, age 76, both hemispheres 261.4
1828 Male, age 53, unknown 249.7
2047 Male, age 72, unknown 217.2
Inferior colliculus
nTPM: 247.8
2097 Female, age 72, unknown 259.4
2849 Male, age 72, unknown 254.6
1848 Female, age 42, unknown 242.5
1890 Male, age 53, unknown 234.6
Median raphe nucleus
nTPM: 253.0
2220 Male, age 76, midline 253.0
Periaquaductal grey, anterior
nTPM: 244.1
2502 Female, age 75, unknown 262.2
1795 Male, age 51, unknown 235.3
1947 Male, age 18, unknown 234.9
Periaquaductal grey, dorsal
nTPM: 255.0
2850 Male, age 76, both hemispheres 299.2
1840 Male, age 53, unknown 247.1
1831 Male, age 72, unknown 241.7
2464 Female, age 72, unknown 231.9
Periaquaductal grey, lateral
nTPM: 266.5
2140 Male, age 76, both hemispheres 286.3
2272 Male, age 74, both hemispheres 269.1
2053 Male, age 18, unknown 244.2
Pretectal area
nTPM: 259.2
2273 Male, age 74, both hemispheres 291.0
1815 Male, age 53, unknown 278.6
1817 Female, age 42, unknown 275.8
2224 Female, age 72, unknown 273.1
1816 Male, age 51, unknown 258.2
2007 Male, age 72, unknown 255.0
2316 Male, age 76, right hemisphere 254.3
1944 Female, age 72, unknown 251.3
2825 Male, age 18, unknown 250.9
2667 Female, age 75, unknown 238.3
2407 Male, age 75, both hemispheres 225.4
Red nucleus
nTPM: 264.4
2725 Female, age 75, unknown 291.5
2503 Female, age 72, unknown 289.1
1821 Female, age 72, unknown 287.8
1865 Male, age 51, unknown 267.9
1904 Male, age 53, unknown 267.4
2588 Male, age 74, left hemisphere 264.4
2227 Male, age 72, unknown 262.8
1954 Female, age 42, unknown 260.5
2785 Male, age 18, unknown 257.0
2823 Male, age 76, right hemisphere 256.7
2769 Male, age 72, unknown 253.5
2584 Male, age 75, left hemisphere 214.1
Substantia nigra
nTPM: 265.3
2699 Male, age 18, unknown 285.5
2409 Female, age 72, unknown 285.2
2241 Male, age 72, unknown 283.3
1916 Female, age 42, unknown 278.9
1851 Male, age 51, unknown 272.2
1889 Female, age 72, unknown 264.8
2665 Male, age 74, both hemispheres 262.4
1941 Male, age 53, unknown 253.3
2590 Female, age 75, unknown 251.7
2583 Male, age 75, right hemisphere 215.9
Superior colliculus
nTPM: 249.8
2587 Male, age 74, left hemisphere 290.6
1995 Male, age 72, unknown 271.7
1913 Female, age 42, unknown 264.4
2261 Male, age 18, unknown 258.2
1839 Male, age 51, unknown 255.2
2087 Female, age 72, unknown 247.1
1796 Male, age 53, unknown 246.1
2668 Female, age 75, unknown 238.3
1895 Male, age 76, right hemisphere 234.4
2664 Male, age 75, both hemispheres 191.9
Ventral tegmental area
nTPM: 256.9
2410 Female, age 72, unknown 268.2
2218 Male, age 76, both hemispheres 264.8
2223 Female, age 72, unknown 264.7
1915 Female, age 42, unknown 256.3
2021 Male, age 53, unknown 251.8
1942 Male, age 51, unknown 235.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 294.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 294.0
Samples: 183

Max nTPM: 513.7
Min nTPM: 168.3
Std nTPM: 67.8
Median nTPM: 286.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 513.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 487.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 466.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 458.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 456.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 450.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 436.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 424.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 421.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 406.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 406.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 288.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 269.7
Samples: 4

Max nTPM: 325.9
Min nTPM: 246.8
Sample A Female 325.9
Sample B Female 255.8
Sample C Male 246.8
Sample D Male 250.3
Midbrain
nTPM: 288.5
Samples: 4

Max nTPM: 411.9
Min nTPM: 210.9
Sample A Female 411.9
Sample B Female 296.1
Sample C Male 234.9
Sample D Male 210.9
Periaqueductal gray
nTPM: 250.8
Samples: 3

Max nTPM: 257.8
Min nTPM: 242.3
Sample B Female 252.3
Sample C Male 257.8
Sample D Male 242.3
Superior colliculi
nTPM: 283.5
Samples: 4

Max nTPM: 302.0
Min nTPM: 265.3
Sample A Female 302.0
Sample B Female 297.8
Sample C Male 265.3
Sample D Male 269.0

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