On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
294.0
nTPM
HPA Brain:
267.5
nTPM
GTEx:
294.0
nTPM
FANTOM5:
22.8
Scaled Tags Per Million
Pig:
285.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
267.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 246.2
1870
Female, age 42, unknown
267.1
1833
Male, age 53, unknown
265.6
1827
Male, age 72, unknown
264.0
2019
Male, age 18, unknown
260.6
1830
Male, age 51, unknown
257.6
2666
Male, age 74, left hemisphere
255.7
2411
Female, age 72, unknown
254.1
2828
Female, age 72, unknown
243.5
2219
Male, age 76, both hemispheres
209.4
2586
Male, age 75, left hemisphere
184.3
Dorsal raphe nucleus nTPM: 256.1
2298
Female, age 72, unknown
284.9
2016
Female, age 72, unknown
264.9
2750
Male, age 76, both hemispheres
262.2
1828
Male, age 53, unknown
250.6
2047
Male, age 72, unknown
217.8
Inferior colliculus nTPM: 248.7
2097
Female, age 72, unknown
260.4
2849
Male, age 72, unknown
255.6
1848
Female, age 42, unknown
243.4
1890
Male, age 53, unknown
235.4
Median raphe nucleus nTPM: 253.7
2220
Male, age 76, midline
253.7
Periaquaductal grey, anterior nTPM: 245.0
2502
Female, age 75, unknown
263.1
1795
Male, age 51, unknown
236.2
1947
Male, age 18, unknown
235.7
Periaquaductal grey, dorsal nTPM: 255.9
2850
Male, age 76, both hemispheres
300.3
1840
Male, age 53, unknown
247.9
1831
Male, age 72, unknown
242.6
2464
Female, age 72, unknown
232.7
Periaquaductal grey, lateral nTPM: 267.5
2140
Male, age 76, both hemispheres
287.3
2272
Male, age 74, both hemispheres
270.2
2053
Male, age 18, unknown
245.0
Pretectal area nTPM: 260.1
2273
Male, age 74, both hemispheres
292.1
1815
Male, age 53, unknown
279.4
1817
Female, age 42, unknown
276.7
2224
Female, age 72, unknown
274.1
1816
Male, age 51, unknown
258.9
2007
Male, age 72, unknown
256.0
2316
Male, age 76, right hemisphere
255.1
1944
Female, age 72, unknown
252.1
2825
Male, age 18, unknown
251.8
2667
Female, age 75, unknown
239.1
2407
Male, age 75, both hemispheres
226.3
Red nucleus nTPM: 265.3
2725
Female, age 75, unknown
292.6
2503
Female, age 72, unknown
289.9
1821
Female, age 72, unknown
288.8
1865
Male, age 51, unknown
268.9
1904
Male, age 53, unknown
268.5
2588
Male, age 74, left hemisphere
265.2
2227
Male, age 72, unknown
263.6
1954
Female, age 42, unknown
261.4
2785
Male, age 18, unknown
258.0
2823
Male, age 76, right hemisphere
257.6
2769
Male, age 72, unknown
254.4
2584
Male, age 75, left hemisphere
214.9
Substantia nigra nTPM: 266.2
2699
Male, age 18, unknown
286.6
2409
Female, age 72, unknown
286.1
2241
Male, age 72, unknown
284.2
1916
Female, age 42, unknown
280.1
1851
Male, age 51, unknown
273.2
1889
Female, age 72, unknown
265.8
2665
Male, age 74, both hemispheres
263.4
1941
Male, age 53, unknown
254.1
2590
Female, age 75, unknown
252.5
2583
Male, age 75, right hemisphere
216.6
Superior colliculus nTPM: 250.7
2587
Male, age 74, left hemisphere
291.7
1995
Male, age 72, unknown
272.7
1913
Female, age 42, unknown
265.5
2261
Male, age 18, unknown
259.1
1839
Male, age 51, unknown
256.1
2087
Female, age 72, unknown
248.0
1796
Male, age 53, unknown
247.0
2668
Female, age 75, unknown
239.2
1895
Male, age 76, right hemisphere
235.1
2664
Male, age 75, both hemispheres
192.7
Ventral tegmental area nTPM: 257.8
2410
Female, age 72, unknown
269.2
2218
Male, age 76, both hemispheres
265.6
2223
Female, age 72, unknown
265.6
1915
Female, age 42, unknown
257.2
2021
Male, age 53, unknown
252.7
1942
Male, age 51, unknown
236.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
294.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 294.0
Samples: 183
Max nTPM: 513.7
Min nTPM: 168.3
Std nTPM: 67.8
Median nTPM: 286.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
513.7
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
487.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
466.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
458.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
456.6
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
450.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
436.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
424.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
421.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
406.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
406.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
406.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
406.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
405.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
402.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
402.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
398.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
395.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
394.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
393.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
392.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
388.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
385.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
383.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
380.6
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
379.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
371.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
370.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
369.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
369.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
361.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
358.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
357.2
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
352.2
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
351.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
350.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
348.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
347.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
345.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
343.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
341.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
340.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
340.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
335.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
334.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
331.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
331.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
331.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
329.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
328.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
326.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
326.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
326.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
325.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
323.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
320.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
318.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
318.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
317.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
315.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
314.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
314.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
311.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
311.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
311.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
309.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
309.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
309.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
308.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
307.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
307.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
306.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
306.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
304.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
304.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
303.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
303.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
303.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
302.4
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
301.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
299.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
298.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
296.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
294.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
293.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
292.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
292.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
291.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
290.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
290.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
287.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
286.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
284.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
284.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
281.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
278.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
275.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
275.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
273.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
273.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
270.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
270.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
269.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
268.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
266.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
266.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
264.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
263.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
263.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
262.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
261.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
260.6
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
257.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
256.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
255.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
255.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
255.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
254.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
253.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
253.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
252.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
251.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
250.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
250.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
249.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
248.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
248.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
246.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
246.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
246.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
245.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
245.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
244.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
243.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
242.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
242.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
241.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
240.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
239.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
239.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
239.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
238.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
238.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
235.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
233.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
231.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
231.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
230.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
230.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
230.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
229.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
229.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
227.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
227.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
227.4
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
227.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
226.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
226.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
225.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
223.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
223.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
222.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
221.9
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
219.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
218.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
218.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
217.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
216.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
215.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
213.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
212.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
212.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
206.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
205.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
204.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
203.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
197.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
195.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
195.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
191.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
184.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
183.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
168.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
285.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 277.5
Samples: 3
Max nTPM: 328.0
Min nTPM: 247.9
Sample A
Female
328.0
Sample B
Female
256.7
Sample C
Male
247.9
Midbrain nTPM: 248.0
Samples: 3
Max nTPM: 297.2
Min nTPM: 211.3
Sample B
Female
297.2
Sample C
Male
235.6
Sample D
Male
211.3
Periaqueductal gray nTPM: 251.4
Samples: 3
Max nTPM: 258.3
Min nTPM: 242.8
Sample B
Female
253.0
Sample C
Male
258.3
Sample D
Male
242.8
Superior colliculi nTPM: 285.0
Samples: 4
Max nTPM: 304.0
Min nTPM: 266.6
Sample A
Female
304.0
Sample B
Female
299.2
Sample C
Male
266.6
Sample D
Male
270.3
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The Human Protein Atlas project is funded
