A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.9
nTPM
Monaco:
101.1
nTPM
Schmiedel:
31.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.9
HPA sample
nTPM
Memory B-cell nTPM: 20.1
Samples: 6
Max nTPM: 29.0
Min nTPM: 7.0
P10809_1017
20.6
P10809_1025
20.9
P10809_1044
7.0
P10809_1063
18.9
P10809_1092
23.9
P10809_1105
29.0
Naive B-cell nTPM: 21.9
Samples: 6
Max nTPM: 37.7
Min nTPM: 15.3
P10809_1011
21.6
P10809_1029
21.0
P10809_1048
37.7
P10809_1067
16.4
P10809_1091
15.3
P10809_1104
19.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 42.2
Samples: 4
Max nTPM: 59.3
Min nTPM: 33.4
RHH5310_R3677
59.3
RHH5218_R3590
39.0
RHH5247_R3619
33.4
RHH5276_R3648
37.0
Naive B-cell nTPM: 49.5
Samples: 4
Max nTPM: 72.7
Min nTPM: 26.5
RHH5308_R3675
43.6
RHH5216_R3588
72.7
RHH5245_R3617
26.5
RHH5274_R3646
55.3
Non-switched memory B-cell nTPM: 46.4
Samples: 4
Max nTPM: 55.0
Min nTPM: 42.8
RHH5309_R3676
55.0
RHH5217_R3589
43.4
RHH5246_R3618
42.8
RHH5275_R3647
44.3
Plasmablast nTPM: 101.1
Samples: 4
Max nTPM: 126.3
Min nTPM: 81.9
RHH5312_R3679
90.9
RHH5220_R3592
126.3
RHH5249_R3621
81.9
RHH5278_R3650
105.2
Switched memory B-cell nTPM: 48.9
Samples: 4
Max nTPM: 55.1
Min nTPM: 40.6
RHH5311_R3678
50.1
RHH5219_R3591
49.8
RHH5248_R3620
40.6
RHH5277_R3649
55.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.3
Schmiedel sample id
TPM
Naive B-cell TPM: 31.3
Samples: 91
Max TPM: 45.5
Min TPM: 14.0
B_CELL_NAIVE_1
45.5
B_CELL_NAIVE_2
42.8
B_CELL_NAIVE_3
41.6
B_CELL_NAIVE_4
40.5
B_CELL_NAIVE_5
39.9
B_CELL_NAIVE_6
39.7
B_CELL_NAIVE_7
39.2
B_CELL_NAIVE_8
37.8
B_CELL_NAIVE_9
37.7
B_CELL_NAIVE_10
37.2
B_CELL_NAIVE_11
37.0
B_CELL_NAIVE_12
36.8
B_CELL_NAIVE_13
36.8
B_CELL_NAIVE_14
36.7
B_CELL_NAIVE_15
36.5
B_CELL_NAIVE_16
36.4
B_CELL_NAIVE_17
36.3
B_CELL_NAIVE_18
36.1
B_CELL_NAIVE_19
35.9
B_CELL_NAIVE_20
35.9
B_CELL_NAIVE_21
35.8
B_CELL_NAIVE_22
35.6
B_CELL_NAIVE_23
35.4
B_CELL_NAIVE_24
35.4
B_CELL_NAIVE_25
35.3
B_CELL_NAIVE_26
35.3
B_CELL_NAIVE_27
35.2
B_CELL_NAIVE_28
35.2
B_CELL_NAIVE_29
35.2
B_CELL_NAIVE_30
34.7
B_CELL_NAIVE_31
34.7
B_CELL_NAIVE_32
34.6
B_CELL_NAIVE_33
34.2
B_CELL_NAIVE_34
34.2
B_CELL_NAIVE_35
34.0
B_CELL_NAIVE_36
34.0
B_CELL_NAIVE_37
33.2
B_CELL_NAIVE_38
33.2
B_CELL_NAIVE_39
33.2
B_CELL_NAIVE_40
33.1
B_CELL_NAIVE_41
32.7
B_CELL_NAIVE_42
32.6
B_CELL_NAIVE_43
32.4
B_CELL_NAIVE_44
32.2
B_CELL_NAIVE_45
32.2
B_CELL_NAIVE_46
32.1
B_CELL_NAIVE_47
32.1
B_CELL_NAIVE_48
32.0
B_CELL_NAIVE_49
31.9
B_CELL_NAIVE_50
31.8
B_CELL_NAIVE_51
31.7
B_CELL_NAIVE_52
31.5
B_CELL_NAIVE_53
31.4
B_CELL_NAIVE_54
31.1
B_CELL_NAIVE_55
30.9
B_CELL_NAIVE_56
30.9
B_CELL_NAIVE_57
30.8
B_CELL_NAIVE_58
30.3
B_CELL_NAIVE_59
30.0
B_CELL_NAIVE_60
30.0
B_CELL_NAIVE_61
29.8
B_CELL_NAIVE_62
29.8
B_CELL_NAIVE_63
29.7
B_CELL_NAIVE_64
29.1
B_CELL_NAIVE_65
29.0
B_CELL_NAIVE_66
28.7
B_CELL_NAIVE_67
28.5
B_CELL_NAIVE_68
28.0
B_CELL_NAIVE_69
28.0
B_CELL_NAIVE_70
27.9
B_CELL_NAIVE_71
27.7
B_CELL_NAIVE_72
27.2
B_CELL_NAIVE_73
26.9
B_CELL_NAIVE_74
25.9
B_CELL_NAIVE_75
25.8
B_CELL_NAIVE_76
25.8
B_CELL_NAIVE_77
25.3
B_CELL_NAIVE_78
25.1
B_CELL_NAIVE_79
24.8
B_CELL_NAIVE_80
24.1
B_CELL_NAIVE_81
23.9
B_CELL_NAIVE_82
22.5
B_CELL_NAIVE_83
22.3
B_CELL_NAIVE_84
22.0
B_CELL_NAIVE_85
20.9
B_CELL_NAIVE_86
18.7
B_CELL_NAIVE_87
17.9
B_CELL_NAIVE_88
17.6
B_CELL_NAIVE_89
16.1
B_CELL_NAIVE_90
15.9
B_CELL_NAIVE_91
14.0
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The Human Protein Atlas project is funded
