A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.7
nTPM
Monaco:
65.2
nTPM
Schmiedel:
29.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.7
HPA sample
nTPM
Classical monocyte nTPM: 17.7
Samples: 6
Max nTPM: 24.2
Min nTPM: 11.9
P10809_1003
24.2
P10809_1020
21.2
P10809_1039
15.4
P10809_1058
11.9
P10809_1080
13.4
P10809_1107
20.0
Intermediate monocyte nTPM: 20.2
Samples: 6
Max nTPM: 25.0
Min nTPM: 15.3
P10809_1004
21.5
P10809_1023
20.2
P10809_1042
19.3
P10809_1061
19.7
P10809_1081
15.3
P10809_1108
25.0
Non-classical monocyte nTPM: 22.7
Samples: 5
Max nTPM: 36.5
Min nTPM: 9.6
P10809_1005
22.0
P10809_1053
24.7
P10809_1072
36.5
P10809_1082
9.6
P10809_1109
20.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.2
Monaco sample
nTPM
Classical monocyte nTPM: 65.2
Samples: 4
Max nTPM: 80.1
Min nTPM: 58.0
RHH5313_R3680
58.0
RHH5221_R3593
58.7
RHH5250_R3622
64.0
RHH5279_R3651
80.1
Intermediate monocyte nTPM: 49.2
Samples: 4
Max nTPM: 62.1
Min nTPM: 35.6
RHH5314_R3681
62.1
RHH5222_R3594
35.6
RHH5251_R3623
52.5
RHH5280_R3652
46.6
Non-classical monocyte nTPM: 56.4
Samples: 4
Max nTPM: 65.1
Min nTPM: 42.6
RHH5315_R3682
62.0
RHH5223_R3595
42.6
RHH5252_R3624
65.1
RHH5281_R3653
55.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.7
Schmiedel sample id
TPM
Classical monocyte TPM: 23.7
Samples: 91
Max TPM: 30.1
Min TPM: 16.5
MONOCYTES_1
30.1
MONOCYTES_2
30.1
MONOCYTES_3
30.1
MONOCYTES_4
29.4
MONOCYTES_5
28.9
MONOCYTES_6
28.9
MONOCYTES_7
28.9
MONOCYTES_8
28.6
MONOCYTES_9
28.5
MONOCYTES_10
28.5
MONOCYTES_11
28.1
MONOCYTES_12
27.9
MONOCYTES_13
27.8
MONOCYTES_14
27.4
MONOCYTES_15
27.3
MONOCYTES_16
27.1
MONOCYTES_17
27.0
MONOCYTES_18
27.0
MONOCYTES_19
26.9
MONOCYTES_20
26.3
MONOCYTES_21
26.2
MONOCYTES_22
26.1
MONOCYTES_23
26.0
MONOCYTES_24
25.6
MONOCYTES_25
25.5
MONOCYTES_26
25.3
MONOCYTES_27
25.3
MONOCYTES_28
25.3
MONOCYTES_29
25.3
MONOCYTES_30
24.9
MONOCYTES_31
24.8
MONOCYTES_32
24.8
MONOCYTES_33
24.4
MONOCYTES_34
24.3
MONOCYTES_35
24.3
MONOCYTES_36
24.2
MONOCYTES_37
24.2
MONOCYTES_38
24.2
MONOCYTES_39
24.2
MONOCYTES_40
24.1
MONOCYTES_41
24.1
MONOCYTES_42
24.0
MONOCYTES_43
23.9
MONOCYTES_44
23.8
MONOCYTES_45
23.8
MONOCYTES_46
23.8
MONOCYTES_47
23.6
MONOCYTES_48
23.5
MONOCYTES_49
23.4
MONOCYTES_50
23.4
MONOCYTES_51
23.4
MONOCYTES_52
23.4
MONOCYTES_53
23.3
MONOCYTES_54
23.3
MONOCYTES_55
23.2
MONOCYTES_56
23.2
MONOCYTES_57
23.1
MONOCYTES_58
23.1
MONOCYTES_59
22.9
MONOCYTES_60
22.4
MONOCYTES_61
22.2
MONOCYTES_62
22.0
MONOCYTES_63
21.9
MONOCYTES_64
21.9
MONOCYTES_65
21.8
MONOCYTES_66
21.8
MONOCYTES_67
21.7
MONOCYTES_68
21.7
MONOCYTES_69
21.6
MONOCYTES_70
21.5
MONOCYTES_71
21.5
MONOCYTES_72
21.4
MONOCYTES_73
21.3
MONOCYTES_74
21.1
MONOCYTES_75
21.0
MONOCYTES_76
21.0
MONOCYTES_77
20.1
MONOCYTES_78
19.9
MONOCYTES_79
19.6
MONOCYTES_80
19.5
MONOCYTES_81
19.5
MONOCYTES_82
19.2
MONOCYTES_83
19.1
MONOCYTES_84
19.0
MONOCYTES_85
18.7
MONOCYTES_86
18.7
MONOCYTES_87
18.2
MONOCYTES_88
17.1
MONOCYTES_89
16.9
MONOCYTES_90
16.6
MONOCYTES_91
16.5
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Non-classical monocyte TPM: 29.7
Samples: 90
Max TPM: 37.9
Min TPM: 17.3
M2_1
37.9
M2_2
37.5
M2_3
37.5
M2_4
36.8
M2_5
36.8
M2_6
36.3
M2_7
35.7
M2_8
35.3
M2_9
35.1
M2_10
34.9
M2_11
34.5
M2_12
34.5
M2_13
34.4
M2_14
34.3
M2_15
34.2
M2_16
34.1
M2_17
34.0
M2_18
34.0
M2_19
33.8
M2_20
33.7
M2_21
33.6
M2_22
33.6
M2_23
33.5
M2_24
33.4
M2_25
33.1
M2_26
33.1
M2_27
32.7
M2_28
32.6
M2_29
32.5
M2_30
32.4
M2_31
32.3
M2_32
32.2
M2_33
32.0
M2_34
31.9
M2_35
31.8
M2_36
31.6
M2_37
31.6
M2_38
31.5
M2_39
31.5
M2_40
31.3
M2_41
31.1
M2_42
31.1
M2_43
30.8
M2_44
30.8
M2_45
30.8
M2_46
30.5
M2_47
30.2
M2_48
30.1
M2_49
30.1
M2_50
30.0
M2_51
29.9
M2_52
29.9
M2_53
29.9
M2_54
29.5
M2_55
29.2
M2_56
29.1
M2_57
28.8
M2_58
28.3
M2_59
28.2
M2_60
27.9
M2_61
27.8
M2_62
27.7
M2_63
27.7
M2_64
27.6
M2_65
27.3
M2_66
27.3
M2_67
27.1
M2_68
26.9
M2_69
26.8
M2_70
26.5
M2_71
26.3
M2_72
25.8
M2_73
25.8
M2_74
25.4
M2_75
24.7
M2_76
24.4
M2_77
24.3
M2_78
23.3
M2_79
22.3
M2_80
22.1
M2_81
22.0
M2_82
21.7
M2_83
21.5
M2_84
21.3
M2_85
21.2
M2_86
20.9
M2_87
20.7
M2_88
20.7
M2_89
18.8
M2_90
17.3
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