A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.5
nTPM
Monaco:
50.4
nTPM
Schmiedel:
47.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.5
HPA sample
nTPM
NK-cell nTPM: 10.5
Samples: 6
Max nTPM: 15.4
Min nTPM: 1.7
P10809_1013
14.8
P10809_1033
13.1
P10809_1052
15.4
P10809_1071
6.7
P10809_1093
1.7
P10809_1103
11.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.4
Monaco sample
nTPM
NK-cell nTPM: 50.4
Samples: 4
Max nTPM: 62.0
Min nTPM: 40.3
RHH5316_R3683
62.0
RHH5224_R3596
53.0
RHH5253_R3625
40.3
RHH5282_R3654
46.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.5
Schmiedel sample id
TPM
NK-cell TPM: 47.5
Samples: 90
Max TPM: 62.9
Min TPM: 29.0
NK_1
62.9
NK_2
61.3
NK_3
60.8
NK_4
60.7
NK_5
60.4
NK_6
59.7
NK_7
59.2
NK_8
58.2
NK_9
57.9
NK_10
57.9
NK_11
57.5
NK_12
57.2
NK_13
55.6
NK_14
55.6
NK_15
54.9
NK_16
54.3
NK_17
54.1
NK_18
53.9
NK_19
53.5
NK_20
53.5
NK_21
53.4
NK_22
53.0
NK_23
52.9
NK_24
52.8
NK_25
52.4
NK_26
51.8
NK_27
51.5
NK_28
51.2
NK_29
51.1
NK_30
51.0
NK_31
51.0
NK_32
50.9
NK_33
50.9
NK_34
50.9
NK_35
50.7
NK_36
50.5
NK_37
50.2
NK_38
50.2
NK_39
50.0
NK_40
50.0
NK_41
49.7
NK_42
49.0
NK_43
49.0
NK_44
48.9
NK_45
48.5
NK_46
48.3
NK_47
48.0
NK_48
47.7
NK_49
47.2
NK_50
47.2
NK_51
46.9
NK_52
46.9
NK_53
46.7
NK_54
46.5
NK_55
46.2
NK_56
46.2
NK_57
45.7
NK_58
45.6
NK_59
45.0
NK_60
44.7
NK_61
44.6
NK_62
44.0
NK_63
43.7
NK_64
43.7
NK_65
43.0
NK_66
42.4
NK_67
42.1
NK_68
41.1
NK_69
40.7
NK_70
40.6
NK_71
40.4
NK_72
40.1
NK_73
40.1
NK_74
39.7
NK_75
39.3
NK_76
39.1
NK_77
39.0
NK_78
38.8
NK_79
38.0
NK_80
37.6
NK_81
37.3
NK_82
37.2
NK_83
34.6
NK_84
34.5
NK_85
34.1
NK_86
33.8
NK_87
32.7
NK_88
31.6
NK_89
29.1
NK_90
29.0
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