A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
86.6
nTPM
Monaco:
122.4
nTPM
Schmiedel:
66.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.6
HPA sample
nTPM
Memory B-cell nTPM: 86.6
Samples: 6
Max nTPM: 106.8
Min nTPM: 65.2
P10809_1017
66.9
P10809_1025
87.9
P10809_1044
106.8
P10809_1063
90.8
P10809_1092
65.2
P10809_1105
101.9
Naive B-cell nTPM: 82.6
Samples: 6
Max nTPM: 139.2
Min nTPM: 52.8
P10809_1011
52.8
P10809_1029
71.6
P10809_1048
139.2
P10809_1067
92.4
P10809_1091
68.3
P10809_1104
71.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 99.4
Samples: 4
Max nTPM: 140.4
Min nTPM: 54.9
RHH5310_R3677
140.4
RHH5218_R3590
108.6
RHH5247_R3619
93.8
RHH5276_R3648
54.9
Naive B-cell nTPM: 93.1
Samples: 4
Max nTPM: 124.6
Min nTPM: 58.3
RHH5308_R3675
103.5
RHH5216_R3588
124.6
RHH5245_R3617
58.3
RHH5274_R3646
85.9
Non-switched memory B-cell nTPM: 116.6
Samples: 4
Max nTPM: 135.3
Min nTPM: 82.6
RHH5309_R3676
131.7
RHH5217_R3589
116.9
RHH5246_R3618
135.3
RHH5275_R3647
82.6
Plasmablast nTPM: 96.1
Samples: 4
Max nTPM: 125.3
Min nTPM: 73.2
RHH5312_R3679
78.3
RHH5220_R3592
107.6
RHH5249_R3621
125.3
RHH5278_R3650
73.2
Switched memory B-cell nTPM: 122.4
Samples: 4
Max nTPM: 148.3
Min nTPM: 96.4
RHH5311_R3678
148.3
RHH5219_R3591
137.0
RHH5248_R3620
107.8
RHH5277_R3649
96.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.7
Schmiedel sample id
TPM
Naive B-cell TPM: 66.7
Samples: 91
Max TPM: 103.0
Min TPM: 20.7
B_CELL_NAIVE_1
103.0
B_CELL_NAIVE_2
95.9
B_CELL_NAIVE_3
92.7
B_CELL_NAIVE_4
92.4
B_CELL_NAIVE_5
89.3
B_CELL_NAIVE_6
88.7
B_CELL_NAIVE_7
88.5
B_CELL_NAIVE_8
87.0
B_CELL_NAIVE_9
86.6
B_CELL_NAIVE_10
85.8
B_CELL_NAIVE_11
85.5
B_CELL_NAIVE_12
85.4
B_CELL_NAIVE_13
85.3
B_CELL_NAIVE_14
84.8
B_CELL_NAIVE_15
84.0
B_CELL_NAIVE_16
83.6
B_CELL_NAIVE_17
83.1
B_CELL_NAIVE_18
83.0
B_CELL_NAIVE_19
82.5
B_CELL_NAIVE_20
82.2
B_CELL_NAIVE_21
82.1
B_CELL_NAIVE_22
81.9
B_CELL_NAIVE_23
80.9
B_CELL_NAIVE_24
80.4
B_CELL_NAIVE_25
80.0
B_CELL_NAIVE_26
79.9
B_CELL_NAIVE_27
78.9
B_CELL_NAIVE_28
78.8
B_CELL_NAIVE_29
78.8
B_CELL_NAIVE_30
78.4
B_CELL_NAIVE_31
77.8
B_CELL_NAIVE_32
77.3
B_CELL_NAIVE_33
76.6
B_CELL_NAIVE_34
76.3
B_CELL_NAIVE_35
76.0
B_CELL_NAIVE_36
75.3
B_CELL_NAIVE_37
74.9
B_CELL_NAIVE_38
74.3
B_CELL_NAIVE_39
74.3
B_CELL_NAIVE_40
72.5
B_CELL_NAIVE_41
72.4
B_CELL_NAIVE_42
71.9
B_CELL_NAIVE_43
71.8
B_CELL_NAIVE_44
71.5
B_CELL_NAIVE_45
71.4
B_CELL_NAIVE_46
70.4
B_CELL_NAIVE_47
68.0
B_CELL_NAIVE_48
67.6
B_CELL_NAIVE_49
67.3
B_CELL_NAIVE_50
67.2
B_CELL_NAIVE_51
67.1
B_CELL_NAIVE_52
65.7
B_CELL_NAIVE_53
65.2
B_CELL_NAIVE_54
65.0
B_CELL_NAIVE_55
64.6
B_CELL_NAIVE_56
63.9
B_CELL_NAIVE_57
62.7
B_CELL_NAIVE_58
62.1
B_CELL_NAIVE_59
61.5
B_CELL_NAIVE_60
61.2
B_CELL_NAIVE_61
60.8
B_CELL_NAIVE_62
59.8
B_CELL_NAIVE_63
59.6
B_CELL_NAIVE_64
59.4
B_CELL_NAIVE_65
59.2
B_CELL_NAIVE_66
58.1
B_CELL_NAIVE_67
58.0
B_CELL_NAIVE_68
57.5
B_CELL_NAIVE_69
56.0
B_CELL_NAIVE_70
54.6
B_CELL_NAIVE_71
54.1
B_CELL_NAIVE_72
52.4
B_CELL_NAIVE_73
52.1
B_CELL_NAIVE_74
51.7
B_CELL_NAIVE_75
49.2
B_CELL_NAIVE_76
48.3
B_CELL_NAIVE_77
48.1
B_CELL_NAIVE_78
47.9
B_CELL_NAIVE_79
47.8
B_CELL_NAIVE_80
46.8
B_CELL_NAIVE_81
42.2
B_CELL_NAIVE_82
41.9
B_CELL_NAIVE_83
38.7
B_CELL_NAIVE_84
35.3
B_CELL_NAIVE_85
34.7
B_CELL_NAIVE_86
32.7
B_CELL_NAIVE_87
31.7
B_CELL_NAIVE_88
22.0
B_CELL_NAIVE_89
21.9
B_CELL_NAIVE_90
20.9
B_CELL_NAIVE_91
20.7
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The Human Protein Atlas project is funded
