A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
64.5
nTPM
Monaco:
67.0
nTPM
Schmiedel:
85.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.5
HPA sample
nTPM
NK-cell nTPM: 64.5
Samples: 6
Max nTPM: 92.0
Min nTPM: 36.2
P10809_1013
36.2
P10809_1033
69.6
P10809_1052
53.1
P10809_1071
76.1
P10809_1093
92.0
P10809_1103
59.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.0
Monaco sample
nTPM
NK-cell nTPM: 67.0
Samples: 4
Max nTPM: 93.9
Min nTPM: 45.8
RHH5316_R3683
93.9
RHH5224_R3596
65.3
RHH5253_R3625
45.8
RHH5282_R3654
63.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.1
Schmiedel sample id
TPM
NK-cell TPM: 85.1
Samples: 90
Max TPM: 121.0
Min TPM: 35.6
NK_1
121.0
NK_2
117.5
NK_3
116.5
NK_4
115.4
NK_5
115.0
NK_6
111.5
NK_7
111.2
NK_8
111.0
NK_9
110.8
NK_10
110.7
NK_11
108.5
NK_12
108.1
NK_13
106.5
NK_14
106.4
NK_15
106.1
NK_16
106.0
NK_17
104.2
NK_18
103.2
NK_19
102.5
NK_20
102.4
NK_21
100.7
NK_22
100.5
NK_23
100.2
NK_24
100.2
NK_25
99.8
NK_26
97.0
NK_27
96.9
NK_28
96.5
NK_29
96.4
NK_30
96.2
NK_31
95.8
NK_32
95.5
NK_33
95.2
NK_34
94.0
NK_35
93.6
NK_36
92.2
NK_37
91.7
NK_38
91.5
NK_39
91.3
NK_40
90.6
NK_41
90.3
NK_42
90.3
NK_43
88.9
NK_44
88.8
NK_45
88.4
NK_46
88.0
NK_47
87.9
NK_48
87.4
NK_49
86.5
NK_50
86.1
NK_51
85.6
NK_52
85.4
NK_53
85.0
NK_54
83.2
NK_55
82.4
NK_56
80.3
NK_57
79.0
NK_58
78.9
NK_59
77.9
NK_60
77.0
NK_61
76.9
NK_62
75.7
NK_63
75.7
NK_64
75.5
NK_65
74.9
NK_66
73.9
NK_67
71.5
NK_68
69.4
NK_69
69.0
NK_70
68.4
NK_71
67.9
NK_72
67.8
NK_73
66.8
NK_74
66.7
NK_75
66.2
NK_76
64.8
NK_77
63.4
NK_78
61.7
NK_79
59.7
NK_80
59.6
NK_81
56.4
NK_82
55.9
NK_83
54.6
NK_84
51.9
NK_85
51.7
NK_86
45.9
NK_87
45.4
NK_88
42.6
NK_89
40.0
NK_90
35.6
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