A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
73.3
nTPM
Monaco:
96.2
nTPM
Schmiedel:
50.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.3
HPA sample
nTPM
Classical monocyte nTPM: 58.9
Samples: 6
Max nTPM: 73.9
Min nTPM: 47.5
P10809_1003
61.0
P10809_1020
61.9
P10809_1039
73.9
P10809_1058
47.5
P10809_1080
51.7
P10809_1107
57.7
Intermediate monocyte nTPM: 54.2
Samples: 6
Max nTPM: 79.0
Min nTPM: 40.0
P10809_1004
46.8
P10809_1023
79.0
P10809_1042
67.0
P10809_1061
48.2
P10809_1081
44.2
P10809_1108
40.0
Non-classical monocyte nTPM: 73.3
Samples: 5
Max nTPM: 101.5
Min nTPM: 53.1
P10809_1005
61.9
P10809_1053
67.4
P10809_1072
101.5
P10809_1082
53.1
P10809_1109
82.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.2
Monaco sample
nTPM
Classical monocyte nTPM: 96.2
Samples: 4
Max nTPM: 111.8
Min nTPM: 75.7
RHH5313_R3680
75.7
RHH5221_R3593
87.1
RHH5250_R3622
111.8
RHH5279_R3651
110.3
Intermediate monocyte nTPM: 70.3
Samples: 4
Max nTPM: 118.1
Min nTPM: 36.0
RHH5314_R3681
118.1
RHH5222_R3594
36.0
RHH5251_R3623
47.6
RHH5280_R3652
79.4
Non-classical monocyte nTPM: 84.2
Samples: 4
Max nTPM: 105.9
Min nTPM: 58.5
RHH5315_R3682
105.9
RHH5223_R3595
58.5
RHH5252_R3624
87.0
RHH5281_R3653
85.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.8
Schmiedel sample id
TPM
Classical monocyte TPM: 43.3
Samples: 91
Max TPM: 59.5
Min TPM: 25.3
MONOCYTES_1
59.5
MONOCYTES_2
57.4
MONOCYTES_3
54.9
MONOCYTES_4
54.6
MONOCYTES_5
54.0
MONOCYTES_6
53.8
MONOCYTES_7
53.6
MONOCYTES_8
53.3
MONOCYTES_9
53.0
MONOCYTES_10
52.4
MONOCYTES_11
52.3
MONOCYTES_12
52.1
MONOCYTES_13
51.9
MONOCYTES_14
51.6
MONOCYTES_15
51.3
MONOCYTES_16
50.4
MONOCYTES_17
49.8
MONOCYTES_18
49.7
MONOCYTES_19
49.6
MONOCYTES_20
49.6
MONOCYTES_21
49.2
MONOCYTES_22
49.2
MONOCYTES_23
49.0
MONOCYTES_24
48.4
MONOCYTES_25
48.4
MONOCYTES_26
48.3
MONOCYTES_27
48.3
MONOCYTES_28
48.2
MONOCYTES_29
48.1
MONOCYTES_30
47.4
MONOCYTES_31
47.3
MONOCYTES_32
46.9
MONOCYTES_33
46.8
MONOCYTES_34
46.7
MONOCYTES_35
46.6
MONOCYTES_36
46.5
MONOCYTES_37
46.5
MONOCYTES_38
46.1
MONOCYTES_39
46.0
MONOCYTES_40
45.9
MONOCYTES_41
45.3
MONOCYTES_42
44.7
MONOCYTES_43
44.7
MONOCYTES_44
44.7
MONOCYTES_45
44.6
MONOCYTES_46
44.2
MONOCYTES_47
43.6
MONOCYTES_48
43.4
MONOCYTES_49
43.4
MONOCYTES_50
43.2
MONOCYTES_51
42.9
MONOCYTES_52
42.7
MONOCYTES_53
41.9
MONOCYTES_54
41.9
MONOCYTES_55
41.9
MONOCYTES_56
41.2
MONOCYTES_57
41.2
MONOCYTES_58
40.9
MONOCYTES_59
40.7
MONOCYTES_60
40.6
MONOCYTES_61
40.5
MONOCYTES_62
40.3
MONOCYTES_63
40.2
MONOCYTES_64
40.2
MONOCYTES_65
40.1
MONOCYTES_66
39.7
MONOCYTES_67
39.3
MONOCYTES_68
39.3
MONOCYTES_69
39.3
MONOCYTES_70
39.0
MONOCYTES_71
38.8
MONOCYTES_72
38.2
MONOCYTES_73
38.0
MONOCYTES_74
37.5
MONOCYTES_75
37.3
MONOCYTES_76
37.3
MONOCYTES_77
36.3
MONOCYTES_78
35.3
MONOCYTES_79
34.0
MONOCYTES_80
33.1
MONOCYTES_81
32.1
MONOCYTES_82
31.0
MONOCYTES_83
30.3
MONOCYTES_84
30.0
MONOCYTES_85
29.8
MONOCYTES_86
28.3
MONOCYTES_87
28.1
MONOCYTES_88
27.3
MONOCYTES_89
26.6
MONOCYTES_90
26.6
MONOCYTES_91
25.3
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Non-classical monocyte TPM: 50.8
Samples: 90
Max TPM: 71.3
Min TPM: 19.8
M2_1
71.3
M2_2
70.6
M2_3
68.4
M2_4
68.2
M2_5
67.5
M2_6
65.5
M2_7
65.4
M2_8
63.7
M2_9
63.7
M2_10
63.5
M2_11
63.4
M2_12
62.5
M2_13
62.2
M2_14
61.5
M2_15
61.4
M2_16
61.2
M2_17
60.9
M2_18
60.8
M2_19
60.5
M2_20
60.2
M2_21
60.1
M2_22
60.1
M2_23
59.5
M2_24
59.2
M2_25
58.8
M2_26
58.7
M2_27
58.7
M2_28
58.6
M2_29
58.5
M2_30
58.2
M2_31
58.0
M2_32
57.9
M2_33
57.8
M2_34
57.4
M2_35
57.2
M2_36
57.0
M2_37
56.9
M2_38
55.8
M2_39
55.8
M2_40
55.8
M2_41
55.8
M2_42
53.9
M2_43
53.5
M2_44
52.7
M2_45
52.1
M2_46
51.6
M2_47
51.4
M2_48
51.1
M2_49
50.9
M2_50
50.7
M2_51
50.2
M2_52
49.8
M2_53
49.7
M2_54
49.2
M2_55
49.2
M2_56
48.9
M2_57
47.9
M2_58
47.9
M2_59
47.6
M2_60
47.4
M2_61
47.0
M2_62
46.3
M2_63
46.3
M2_64
45.8
M2_65
45.5
M2_66
45.2
M2_67
43.7
M2_68
43.1
M2_69
41.5
M2_70
41.0
M2_71
39.7
M2_72
39.7
M2_73
39.5
M2_74
39.2
M2_75
38.8
M2_76
38.5
M2_77
38.0
M2_78
36.5
M2_79
35.9
M2_80
33.9
M2_81
33.9
M2_82
33.2
M2_83
31.6
M2_84
31.3
M2_85
30.6
M2_86
30.1
M2_87
29.0
M2_88
27.3
M2_89
22.2
M2_90
19.8
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