We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ARCN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ARCN1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:58.6 nTPM
HPA Brain:58.9 nTPM
GTEx:58.6 nTPM
FANTOM5:79.3 Scaled Tags Per Million
Pig:67.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 51.4
1981 Female, age 72, midline 57.1
2565 Male, age 75, midline 50.9
2048 Male, age 55, midline 50.6
2816 Male, age 47, midline 49.3
2194 Female, age 79, both hemispheres 49.0
Cervical spinal cord, dorsal horn
nTPM: 58.9
2296 Male, age 66, both hemispheres 71.4
2173 Female, age 72, unknown 64.2
2069 Male, age 47, both hemispheres 61.2
2297 Male, age 75, both hemispheres 56.5
1877 Male, age 55, unknown 53.1
2721 Male, age 90, both hemispheres 47.1
Cervical spinal cord, ventral horn
nTPM: 55.8
2480 Male, age 75, both hemispheres 61.4
2098 Female, age 72, unknown 59.4
2809 Male, age 90, both hemispheres 59.0
2295 Male, age 66, both hemispheres 53.8
2068 Male, age 55, unknown 51.1
2820 Female, age 79, both hemispheres 50.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 58.6
Samples: 204

Max nTPM: 85.8
Min nTPM: 39.8
Std nTPM: 9.1
Median nTPM: 57.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 85.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 84.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 84.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 80.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 79.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 78.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 77.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 77.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 77.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 76.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 76.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 75.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 75.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 73.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 73.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 73.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 73.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 73.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 73.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 73.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 72.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 72.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 72.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 72.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 71.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 70.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 70.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 70.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 69.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 69.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 68.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 68.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 67.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 66.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 66.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 66.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 65.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 65.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 65.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 65.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 65.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 65.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 64.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 64.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 63.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 63.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 63.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 63.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 63.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 63.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 63.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 63.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 63.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 62.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 62.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 62.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 62.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 62.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 62.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 62.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 62.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 62.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 61.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 61.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 61.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 61.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 61.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 61.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 60.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 60.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 60.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 60.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 60.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 60.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 60.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 60.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 60.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 60.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 60.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 60.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 59.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 59.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 59.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 59.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 59.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 59.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 59.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 59.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 58.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 58.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 58.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 58.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 58.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 58.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 58.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 58.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 58.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 58.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 58.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 57.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 57.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 57.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 57.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 57.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 57.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 57.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 57.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 57.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 57.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 57.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 56.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 56.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 56.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 56.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 56.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 55.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 55.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 55.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 55.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 55.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 55.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 55.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 55.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 54.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 54.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 54.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 54.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 54.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 54.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 54.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 54.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 54.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 54.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 54.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 54.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 54.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 54.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 54.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 53.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 53.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 53.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 53.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 53.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 53.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 53.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 53.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 53.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 52.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 52.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 52.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 52.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 52.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 52.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 52.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 52.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 52.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 51.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 51.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 51.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 51.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 51.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 51.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 50.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 50.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 50.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 50.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 50.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 50.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 50.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 49.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 49.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 49.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 49.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 48.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 48.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 48.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 48.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 48.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 47.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 47.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 47.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 47.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 47.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 47.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 47.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 46.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 46.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 46.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 46.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 45.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 45.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 45.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 44.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 44.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 44.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 43.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 42.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 42.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 41.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 40.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 39.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

79.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 79.3
FF:10159-103A6 76 years, female 93.5
FF:10181-103D1 60 years, female 65.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 67.6
Samples: 4

Max nTPM: 77.4
Min nTPM: 59.4
Sample A Female 59.4
Sample B Female 72.8
Sample C Male 77.4
Sample D Male 60.8
Ventral spinal cord
nTPM: 66.4
Samples: 4

Max nTPM: 71.9
Min nTPM: 62.0
Sample A Female 65.1
Sample B Female 66.5
Sample C Male 62.0
Sample D Male 71.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo