A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.6
nTPM
Monaco:
118.3
nTPM
Schmiedel:
34.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.6
HPA sample
nTPM
Memory B-cell nTPM: 26.3
Samples: 6
Max nTPM: 35.1
Min nTPM: 6.6
P10809_1017
35.1
P10809_1025
29.8
P10809_1044
6.6
P10809_1063
31.1
P10809_1092
28.8
P10809_1105
26.5
Naive B-cell nTPM: 29.6
Samples: 6
Max nTPM: 36.7
Min nTPM: 22.0
P10809_1011
34.6
P10809_1029
25.1
P10809_1048
22.0
P10809_1067
29.9
P10809_1091
29.5
P10809_1104
36.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 113.4
Samples: 4
Max nTPM: 125.9
Min nTPM: 96.6
RHH5310_R3677
122.8
RHH5218_R3590
108.4
RHH5247_R3619
96.6
RHH5276_R3648
125.9
Naive B-cell nTPM: 107.7
Samples: 4
Max nTPM: 115.1
Min nTPM: 88.2
RHH5308_R3675
114.9
RHH5216_R3588
115.1
RHH5245_R3617
88.2
RHH5274_R3646
112.7
Non-switched memory B-cell nTPM: 118.3
Samples: 4
Max nTPM: 137.7
Min nTPM: 101.3
RHH5309_R3676
108.3
RHH5217_R3589
101.3
RHH5246_R3618
125.7
RHH5275_R3647
137.7
Plasmablast nTPM: 46.8
Samples: 4
Max nTPM: 51.0
Min nTPM: 36.2
RHH5312_R3679
48.8
RHH5220_R3592
51.0
RHH5249_R3621
36.2
RHH5278_R3650
51.0
Switched memory B-cell nTPM: 112.4
Samples: 4
Max nTPM: 134.1
Min nTPM: 98.3
RHH5311_R3678
115.8
RHH5219_R3591
98.3
RHH5248_R3620
134.1
RHH5277_R3649
101.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.0
Schmiedel sample id
TPM
Naive B-cell TPM: 34.0
Samples: 91
Max TPM: 70.1
Min TPM: 5.3
B_CELL_NAIVE_1
70.1
B_CELL_NAIVE_2
66.0
B_CELL_NAIVE_3
63.8
B_CELL_NAIVE_4
62.1
B_CELL_NAIVE_5
58.2
B_CELL_NAIVE_6
58.0
B_CELL_NAIVE_7
57.9
B_CELL_NAIVE_8
55.4
B_CELL_NAIVE_9
54.5
B_CELL_NAIVE_10
53.3
B_CELL_NAIVE_11
52.0
B_CELL_NAIVE_12
51.9
B_CELL_NAIVE_13
51.6
B_CELL_NAIVE_14
51.6
B_CELL_NAIVE_15
51.2
B_CELL_NAIVE_16
50.6
B_CELL_NAIVE_17
50.3
B_CELL_NAIVE_18
48.7
B_CELL_NAIVE_19
47.7
B_CELL_NAIVE_20
45.4
B_CELL_NAIVE_21
45.0
B_CELL_NAIVE_22
44.4
B_CELL_NAIVE_23
43.8
B_CELL_NAIVE_24
41.9
B_CELL_NAIVE_25
41.8
B_CELL_NAIVE_26
41.5
B_CELL_NAIVE_27
41.2
B_CELL_NAIVE_28
40.4
B_CELL_NAIVE_29
40.1
B_CELL_NAIVE_30
40.0
B_CELL_NAIVE_31
39.9
B_CELL_NAIVE_32
39.2
B_CELL_NAIVE_33
38.7
B_CELL_NAIVE_34
38.5
B_CELL_NAIVE_35
38.4
B_CELL_NAIVE_36
38.3
B_CELL_NAIVE_37
37.6
B_CELL_NAIVE_38
37.3
B_CELL_NAIVE_39
37.3
B_CELL_NAIVE_40
36.6
B_CELL_NAIVE_41
36.4
B_CELL_NAIVE_42
35.5
B_CELL_NAIVE_43
35.5
B_CELL_NAIVE_44
35.3
B_CELL_NAIVE_45
34.8
B_CELL_NAIVE_46
34.5
B_CELL_NAIVE_47
33.5
B_CELL_NAIVE_48
33.3
B_CELL_NAIVE_49
33.3
B_CELL_NAIVE_50
32.8
B_CELL_NAIVE_51
32.2
B_CELL_NAIVE_52
30.6
B_CELL_NAIVE_53
30.3
B_CELL_NAIVE_54
30.0
B_CELL_NAIVE_55
29.8
B_CELL_NAIVE_56
28.7
B_CELL_NAIVE_57
26.8
B_CELL_NAIVE_58
26.7
B_CELL_NAIVE_59
26.6
B_CELL_NAIVE_60
26.4
B_CELL_NAIVE_61
26.1
B_CELL_NAIVE_62
26.1
B_CELL_NAIVE_63
25.5
B_CELL_NAIVE_64
24.5
B_CELL_NAIVE_65
24.4
B_CELL_NAIVE_66
24.0
B_CELL_NAIVE_67
23.0
B_CELL_NAIVE_68
22.6
B_CELL_NAIVE_69
22.6
B_CELL_NAIVE_70
22.0
B_CELL_NAIVE_71
21.6
B_CELL_NAIVE_72
21.5
B_CELL_NAIVE_73
21.5
B_CELL_NAIVE_74
20.2
B_CELL_NAIVE_75
19.5
B_CELL_NAIVE_76
18.4
B_CELL_NAIVE_77
18.0
B_CELL_NAIVE_78
17.7
B_CELL_NAIVE_79
17.5
B_CELL_NAIVE_80
16.4
B_CELL_NAIVE_81
15.9
B_CELL_NAIVE_82
14.9
B_CELL_NAIVE_83
14.6
B_CELL_NAIVE_84
13.6
B_CELL_NAIVE_85
12.7
B_CELL_NAIVE_86
11.2
B_CELL_NAIVE_87
9.6
B_CELL_NAIVE_88
8.9
B_CELL_NAIVE_89
8.8
B_CELL_NAIVE_90
8.5
B_CELL_NAIVE_91
5.3
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The Human Protein Atlas project is funded
