A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
125.4
nTPM
Monaco:
404.5
nTPM
Schmiedel:
135.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.4
HPA sample
nTPM
Classical monocyte nTPM: 29.9
Samples: 6
Max nTPM: 44.7
Min nTPM: 16.0
P10809_1003
44.7
P10809_1020
30.3
P10809_1039
16.0
P10809_1058
22.1
P10809_1080
33.7
P10809_1107
32.5
Intermediate monocyte nTPM: 94.7
Samples: 6
Max nTPM: 135.2
Min nTPM: 62.2
P10809_1004
135.2
P10809_1023
72.1
P10809_1042
116.6
P10809_1061
107.9
P10809_1081
62.2
P10809_1108
74.0
Non-classical monocyte nTPM: 125.4
Samples: 5
Max nTPM: 196.4
Min nTPM: 62.7
P10809_1005
154.6
P10809_1053
131.8
P10809_1072
196.4
P10809_1082
62.7
P10809_1109
81.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
404.5
Monaco sample
nTPM
Classical monocyte nTPM: 107.1
Samples: 4
Max nTPM: 136.7
Min nTPM: 93.4
RHH5313_R3680
136.7
RHH5221_R3593
93.4
RHH5250_R3622
100.7
RHH5279_R3651
97.4
Intermediate monocyte nTPM: 284.9
Samples: 4
Max nTPM: 314.1
Min nTPM: 266.6
RHH5314_R3681
266.6
RHH5222_R3594
314.1
RHH5251_R3623
289.9
RHH5280_R3652
269.0
Non-classical monocyte nTPM: 404.5
Samples: 4
Max nTPM: 449.0
Min nTPM: 359.3
RHH5315_R3682
449.0
RHH5223_R3595
409.5
RHH5252_R3624
400.3
RHH5281_R3653
359.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.5
Schmiedel sample id
TPM
Classical monocyte TPM: 43.1
Samples: 91
Max TPM: 73.4
Min TPM: 18.1
MONOCYTES_1
73.4
MONOCYTES_2
73.0
MONOCYTES_3
72.2
MONOCYTES_4
69.0
MONOCYTES_5
67.6
MONOCYTES_6
64.8
MONOCYTES_7
64.1
MONOCYTES_8
63.7
MONOCYTES_9
62.5
MONOCYTES_10
58.6
MONOCYTES_11
58.3
MONOCYTES_12
58.3
MONOCYTES_13
57.8
MONOCYTES_14
57.5
MONOCYTES_15
56.8
MONOCYTES_16
55.8
MONOCYTES_17
55.7
MONOCYTES_18
55.0
MONOCYTES_19
54.9
MONOCYTES_20
54.4
MONOCYTES_21
52.3
MONOCYTES_22
52.1
MONOCYTES_23
52.0
MONOCYTES_24
51.9
MONOCYTES_25
50.4
MONOCYTES_26
50.2
MONOCYTES_27
50.1
MONOCYTES_28
49.8
MONOCYTES_29
49.6
MONOCYTES_30
49.5
MONOCYTES_31
49.0
MONOCYTES_32
48.1
MONOCYTES_33
46.9
MONOCYTES_34
46.8
MONOCYTES_35
46.6
MONOCYTES_36
46.4
MONOCYTES_37
44.8
MONOCYTES_38
44.4
MONOCYTES_39
44.1
MONOCYTES_40
43.4
MONOCYTES_41
43.4
MONOCYTES_42
43.0
MONOCYTES_43
42.9
MONOCYTES_44
42.0
MONOCYTES_45
41.2
MONOCYTES_46
40.4
MONOCYTES_47
40.3
MONOCYTES_48
40.2
MONOCYTES_49
40.2
MONOCYTES_50
40.1
MONOCYTES_51
39.9
MONOCYTES_52
39.7
MONOCYTES_53
39.2
MONOCYTES_54
39.2
MONOCYTES_55
38.4
MONOCYTES_56
38.4
MONOCYTES_57
38.0
MONOCYTES_58
37.5
MONOCYTES_59
37.5
MONOCYTES_60
37.4
MONOCYTES_61
37.2
MONOCYTES_62
37.2
MONOCYTES_63
36.3
MONOCYTES_64
35.7
MONOCYTES_65
35.6
MONOCYTES_66
34.7
MONOCYTES_67
33.4
MONOCYTES_68
33.1
MONOCYTES_69
33.0
MONOCYTES_70
33.0
MONOCYTES_71
32.6
MONOCYTES_72
32.5
MONOCYTES_73
31.9
MONOCYTES_74
31.0
MONOCYTES_75
30.9
MONOCYTES_76
30.5
MONOCYTES_77
30.5
MONOCYTES_78
29.8
MONOCYTES_79
29.4
MONOCYTES_80
28.9
MONOCYTES_81
28.2
MONOCYTES_82
27.6
MONOCYTES_83
27.5
MONOCYTES_84
25.9
MONOCYTES_85
25.6
MONOCYTES_86
25.0
MONOCYTES_87
24.8
MONOCYTES_88
22.3
MONOCYTES_89
21.8
MONOCYTES_90
20.0
MONOCYTES_91
18.1
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Non-classical monocyte TPM: 135.5
Samples: 90
Max TPM: 268.3
Min TPM: 38.3
M2_1
268.3
M2_2
263.3
M2_3
251.2
M2_4
247.1
M2_5
240.7
M2_6
222.7
M2_7
217.1
M2_8
210.6
M2_9
204.3
M2_10
199.5
M2_11
198.7
M2_12
198.1
M2_13
197.5
M2_14
196.0
M2_15
183.5
M2_16
182.1
M2_17
180.7
M2_18
180.3
M2_19
177.5
M2_20
175.8
M2_21
173.1
M2_22
171.0
M2_23
170.0
M2_24
165.8
M2_25
165.2
M2_26
162.6
M2_27
159.5
M2_28
158.8
M2_29
156.9
M2_30
155.7
M2_31
154.9
M2_32
154.0
M2_33
152.8
M2_34
150.3
M2_35
149.5
M2_36
149.4
M2_37
146.9
M2_38
146.5
M2_39
146.1
M2_40
145.0
M2_41
144.6
M2_42
144.1
M2_43
142.9
M2_44
139.7
M2_45
137.0
M2_46
136.8
M2_47
136.5
M2_48
134.9
M2_49
133.2
M2_50
131.5
M2_51
126.5
M2_52
124.4
M2_53
121.3
M2_54
119.6
M2_55
116.6
M2_56
115.8
M2_57
113.3
M2_58
111.5
M2_59
108.4
M2_60
106.3
M2_61
105.7
M2_62
105.4
M2_63
104.4
M2_64
100.9
M2_65
97.8
M2_66
97.7
M2_67
95.0
M2_68
91.2
M2_69
90.9
M2_70
88.8
M2_71
86.0
M2_72
85.8
M2_73
83.1
M2_74
78.8
M2_75
78.4
M2_76
77.5
M2_77
76.0
M2_78
71.0
M2_79
69.6
M2_80
68.2
M2_81
67.2
M2_82
65.9
M2_83
65.5
M2_84
65.4
M2_85
62.5
M2_86
56.8
M2_87
51.1
M2_88
50.1
M2_89
48.1
M2_90
38.3
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