A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.7
nTPM
Monaco:
112.5
nTPM
Schmiedel:
71.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.7
HPA sample
nTPM
NK-cell nTPM: 34.7
Samples: 6
Max nTPM: 45.0
Min nTPM: 26.0
P10809_1013
27.8
P10809_1033
31.8
P10809_1052
39.6
P10809_1071
37.9
P10809_1093
26.0
P10809_1103
45.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.5
Monaco sample
nTPM
NK-cell nTPM: 112.5
Samples: 4
Max nTPM: 151.6
Min nTPM: 79.7
RHH5316_R3683
151.6
RHH5224_R3596
112.5
RHH5253_R3625
106.2
RHH5282_R3654
79.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.8
Schmiedel sample id
TPM
NK-cell TPM: 71.8
Samples: 90
Max TPM: 142.3
Min TPM: 15.9
NK_1
142.3
NK_2
139.2
NK_3
138.4
NK_4
131.1
NK_5
122.1
NK_6
120.2
NK_7
115.4
NK_8
115.4
NK_9
114.4
NK_10
114.3
NK_11
111.3
NK_12
110.3
NK_13
107.0
NK_14
104.4
NK_15
102.6
NK_16
98.8
NK_17
98.2
NK_18
97.5
NK_19
95.5
NK_20
94.2
NK_21
94.1
NK_22
93.9
NK_23
93.1
NK_24
92.5
NK_25
90.3
NK_26
89.9
NK_27
89.3
NK_28
88.6
NK_29
87.6
NK_30
85.9
NK_31
84.1
NK_32
82.8
NK_33
82.6
NK_34
82.2
NK_35
80.3
NK_36
79.9
NK_37
79.6
NK_38
79.3
NK_39
77.5
NK_40
77.5
NK_41
77.4
NK_42
77.0
NK_43
75.4
NK_44
73.8
NK_45
73.6
NK_46
72.6
NK_47
70.6
NK_48
70.6
NK_49
70.2
NK_50
65.7
NK_51
65.7
NK_52
65.4
NK_53
64.7
NK_54
62.8
NK_55
59.8
NK_56
59.4
NK_57
58.7
NK_58
57.9
NK_59
56.4
NK_60
56.4
NK_61
56.1
NK_62
53.5
NK_63
53.2
NK_64
51.8
NK_65
50.1
NK_66
49.8
NK_67
48.6
NK_68
48.0
NK_69
46.6
NK_70
46.3
NK_71
45.3
NK_72
44.1
NK_73
40.9
NK_74
40.0
NK_75
40.0
NK_76
39.7
NK_77
36.2
NK_78
34.7
NK_79
33.1
NK_80
32.2
NK_81
30.9
NK_82
29.7
NK_83
29.4
NK_84
29.2
NK_85
28.9
NK_86
23.8
NK_87
23.5
NK_88
23.3
NK_89
19.4
NK_90
15.9
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